Result of FASTA (omim) for
pF1KB9644
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9644, 179 aa
1>>>pF1KB9644 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8131+/-0.000324; mu= -4.8535+/- 0.020
mean_var=289.6260+/-58.146, 0's: 0 Z-trim(125.1): 196 B-trim: 33 in 1/60
Lambda= 0.075363
statistics sampled from 47847 (48043) to 47847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.563), width: 16
Scan time: 7.230
The best scores are: opt bits E(85289)
NP_057642 (OMIM: 610416) SCAN domain-containing pr ( 179) 1174 139.3 3.3e-33
NP_361012 (OMIM: 610416) SCAN domain-containing pr ( 242) 1174 139.4 4.1e-33
XP_016881664 (OMIM: 605467) PREDICTED: neurotrophi ( 296) 289 43.2 0.00044
NP_001295052 (OMIM: 194534) zinc finger protein 24 ( 193) 284 42.5 0.00046
XP_011525566 (OMIM: 194550) PREDICTED: myeloid zin ( 764) 297 44.5 0.00048
XP_005259261 (OMIM: 194550) PREDICTED: myeloid zin ( 775) 297 44.5 0.00049
NP_001253962 (OMIM: 194550) myeloid zinc finger 1 ( 290) 285 42.8 0.00058
NP_057409 (OMIM: 605467) neurotrophin receptor-int ( 621) 290 43.6 0.0007
NP_001265663 (OMIM: 605467) neurotrophin receptor- ( 611) 289 43.5 0.00075
NP_008896 (OMIM: 194534) zinc finger protein 24 is ( 368) 284 42.8 0.00075
XP_005258398 (OMIM: 194534) PREDICTED: zinc finger ( 368) 284 42.8 0.00075
NP_598009 (OMIM: 605467) neurotrophin receptor-int ( 653) 289 43.5 0.00079
XP_006711901 (OMIM: 613911) PREDICTED: zinc finger ( 381) 282 42.6 0.00089
NP_001316662 (OMIM: 613911) zinc finger protein 49 ( 386) 282 42.6 0.0009
XP_016858082 (OMIM: 613911) PREDICTED: zinc finger ( 405) 282 42.6 0.00093
XP_011542618 (OMIM: 613911) PREDICTED: zinc finger ( 412) 282 42.6 0.00095
XP_011542616 (OMIM: 613911) PREDICTED: zinc finger ( 427) 282 42.6 0.00097
XP_011542617 (OMIM: 613911) PREDICTED: zinc finger ( 427) 282 42.6 0.00097
NP_001309220 (OMIM: 609600) zinc finger protein 39 ( 210) 275 41.6 0.00097
XP_016858081 (OMIM: 613911) PREDICTED: zinc finger ( 443) 282 42.6 0.001
NP_057408 (OMIM: 605467) neurotrophin receptor-int ( 548) 284 42.9 0.001
XP_016881663 (OMIM: 605467) PREDICTED: neurotrophi ( 548) 284 42.9 0.001
XP_011524629 (OMIM: 605467) PREDICTED: neurotrophi ( 548) 284 42.9 0.001
NP_006289 (OMIM: 602240) zinc finger protein with ( 578) 283 42.8 0.0011
XP_011513172 (OMIM: 602240) PREDICTED: zinc finger ( 578) 283 42.8 0.0011
NP_001265048 (OMIM: 602240) zinc finger protein wi ( 578) 283 42.8 0.0011
XP_016866755 (OMIM: 602240) PREDICTED: zinc finger ( 578) 283 42.8 0.0011
NP_001027463 (OMIM: 603900) zinc finger protein 17 ( 234) 274 41.5 0.0011
NP_003413 (OMIM: 194550) myeloid zinc finger 1 iso ( 734) 285 43.1 0.0012
NP_932172 (OMIM: 194550) myeloid zinc finger 1 iso ( 734) 285 43.1 0.0012
XP_016881178 (OMIM: 609600) PREDICTED: zinc finger ( 266) 275 41.7 0.0012
NP_116141 (OMIM: 613911) zinc finger protein 496 i ( 587) 282 42.7 0.0012
NP_001333508 (OMIM: 601260) zinc finger protein wi ( 321) 276 41.8 0.0012
XP_016868074 (OMIM: 601261) PREDICTED: zinc finger ( 450) 279 42.3 0.0013
XP_016858079 (OMIM: 613911) PREDICTED: zinc finger ( 618) 282 42.7 0.0013
XP_011542614 (OMIM: 613911) PREDICTED: zinc finger ( 618) 282 42.7 0.0013
XP_005273385 (OMIM: 613911) PREDICTED: zinc finger ( 623) 282 42.8 0.0013
NP_666019 (OMIM: 601261) zinc finger and SCAN doma ( 473) 279 42.3 0.0013
XP_006716176 (OMIM: 601261) PREDICTED: zinc finger ( 473) 279 42.3 0.0013
XP_005250625 (OMIM: 601261) PREDICTED: zinc finger ( 473) 279 42.3 0.0013
XP_016868073 (OMIM: 601261) PREDICTED: zinc finger ( 473) 279 42.3 0.0013
XP_016858078 (OMIM: 613911) PREDICTED: zinc finger ( 649) 282 42.8 0.0013
XP_016858077 (OMIM: 613911) PREDICTED: zinc finger ( 654) 282 42.8 0.0013
XP_011542612 (OMIM: 613911) PREDICTED: zinc finger ( 654) 282 42.8 0.0013
NP_665699 (OMIM: 609600) zinc finger protein 396 i ( 333) 275 41.8 0.0014
XP_016881176 (OMIM: 609600) PREDICTED: zinc finger ( 335) 275 41.8 0.0014
XP_006722495 (OMIM: 609600) PREDICTED: zinc finger ( 335) 275 41.8 0.0014
NP_001309219 (OMIM: 609600) zinc finger protein 39 ( 335) 275 41.8 0.0014
NP_001309215 (OMIM: 609600) zinc finger protein 39 ( 335) 275 41.8 0.0014
XP_016881177 (OMIM: 609600) PREDICTED: zinc finger ( 335) 275 41.8 0.0014
>>NP_057642 (OMIM: 610416) SCAN domain-containing protei (179 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 717.3 bits: 139.3 E(85289): 3.3e-33
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KB9 MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAA
70 80 90 100 110 120
130 140 150 160 170
pF1KB9 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
130 140 150 160 170
>>NP_361012 (OMIM: 610416) SCAN domain-containing protei (242 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 715.5 bits: 139.4 E(85289): 4.1e-33
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:64-242)
10 20 30
pF1KB9 MAATEPILAATGSPAAVPPEKLEGAGSSSA
::::::::::::::::::::::::::::::
NP_361 RFRLPQALRWCRRSAEHTATGQRVTPGAGVMAATEPILAATGSPAAVPPEKLEGAGSSSA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 PERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAASAALELPLGPAPVSVAPQAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_361 PERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAASAALELPLGPAPVSVAPQAEAE
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB9 ARSTPGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_361 ARSTPGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEM
160 170 180 190 200 210
160 170
pF1KB9 LVQEQLLAILPEAARARRIRRRTDVRITG
:::::::::::::::::::::::::::::
NP_361 LVQEQLLAILPEAARARRIRRRTDVRITG
220 230 240
>>XP_016881664 (OMIM: 605467) PREDICTED: neurotrophin re (296 aa)
initn: 295 init1: 272 opt: 289 Z-score: 194.3 bits: 43.2 E(85289): 0.00044
Smith-Waterman score: 289; 42.5% identity (60.6% similar) in 127 aa overlap (40-165:99-218)
10 20 30 40 50 60
pF1KB9 ATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAAS
:: :: .. . . :: :
XP_016 AEDFWPVERGIPQDTIPEYPELQLDPKLDPLPAESPLMNIEVVEVLTLNQEVAGPRNAQI
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB9 AALELPLGPAPVSVAPQAEAEARST-PGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQ
:: : .. ::. ... .. :: ::. :::::::::.: .:::::. :
XP_016 QALYAEDGSLSAD-APSEQVQQQGKHPG------DPEAARQRFRQFRYKDMTGPREALDQ
130 140 150 160 170 180
130 140 150 160 170
pF1KB9 LRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
:::: .:::.: :.::::.:.:: ::.:. :: :
XP_016 LRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQEVVALVEGVTW
190 200 210 220 230 240
XP_016 MSEEEGASDLPGCGCGLQPGGVGAAGPDTEDRVPRCDAGDLWAPGLCGVGDYTGK
250 260 270 280 290
>>NP_001295052 (OMIM: 194534) zinc finger protein 24 iso (193 aa)
initn: 340 init1: 284 opt: 284 Z-score: 193.9 bits: 42.5 E(85289): 0.00046
Smith-Waterman score: 284; 69.5% identity (84.7% similar) in 59 aa overlap (104-162:48-106)
80 90 100 110 120 130
pF1KB9 LPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQLRELS
:: :::::::: :::. ::::: :::::
NP_001 DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFRQRFRQFGYQDSPGPREAVSQLRELC
20 30 40 50 60 70
140 150 160 170
pF1KB9 RQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
: ::::. .:::::.:..: ::..::::.
NP_001 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESELDDP
80 90 100 110 120 130
>>XP_011525566 (OMIM: 194550) PREDICTED: myeloid zinc fi (764 aa)
initn: 318 init1: 283 opt: 297 Z-score: 193.6 bits: 44.5 E(85289): 0.00048
Smith-Waterman score: 297; 45.1% identity (68.1% similar) in 113 aa overlap (57-167:24-133)
30 40 50 60 70 80
pF1KB9 SSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAASAALELPLGPAPVSVAP-
.:. .:. : :.: : : . .:
XP_011 MPTHGFEAGSMGRSGQEGRHWPQIPDLVPSMRP---AVLGSPDRAPPEDEGPV
10 20 30 40 50
90 100 110 120 130 140
pF1KB9 QAEAEARSTPGPAGS-RLGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTK
... : : :. :::. : ::: :::..:.::.::. ::::: ::::::..:.:
XP_011 MVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGPQEALAQLRELCRQWLRPEVRSK
60 70 80 90 100 110
150 160 170
pF1KB9 EQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
::..:.:: ::.:. :: .::
XP_011 EQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRREPGGPRRWVTVQVQGQ
120 130 140 150 160 170
>>XP_005259261 (OMIM: 194550) PREDICTED: myeloid zinc fi (775 aa)
initn: 318 init1: 283 opt: 297 Z-score: 193.5 bits: 44.5 E(85289): 0.00049
Smith-Waterman score: 297; 45.1% identity (68.1% similar) in 113 aa overlap (57-167:35-144)
30 40 50 60 70 80
pF1KB9 SSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAASAALELPLGPAPVSVAP-
.:. .:. : :.: : : . .:
XP_005 CHPLHKRRFLPKAAAAEGTARGGRGRHWPQIPDLVPSMRP---AVLGSPDRAPPEDEGPV
10 20 30 40 50 60
90 100 110 120 130 140
pF1KB9 QAEAEARSTPGPAGS-RLGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTK
... : : :. :::. : ::: :::..:.::.::. ::::: ::::::..:.:
XP_005 MVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGPQEALAQLRELCRQWLRPEVRSK
70 80 90 100 110 120
150 160 170
pF1KB9 EQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
::..:.:: ::.:. :: .::
XP_005 EQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRREPGGPRRWVTVQVQGQ
130 140 150 160 170 180
>>NP_001253962 (OMIM: 194550) myeloid zinc finger 1 isof (290 aa)
initn: 318 init1: 283 opt: 285 Z-score: 192.1 bits: 42.8 E(85289): 0.00058
Smith-Waterman score: 285; 49.5% identity (71.4% similar) in 91 aa overlap (77-167:18-103)
50 60 70 80 90 100
pF1KB9 APEPSSPNAAVPEAIPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPET
::. :.. . : . : :::.
NP_001 MRPAVLGSPDRAPPEDEGPVMVKLEDSEEEGEAALWDP-----GPEA
10 20 30 40
110 120 130 140 150 160
pF1KB9 FRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARA
: ::: :::..:.::.::. ::::: ::::::..:.:::..:.:: ::.:. :: .:
NP_001 ARLRFRCFRYEEATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQA
50 60 70 80 90 100
170
pF1KB9 RRIRRRTDVRITG
:
NP_001 RVQGQRPGSPEEAAALVDGLRREPGGPRRWVTVQVQGQEVLSEKMEPSSFQPLPETEPPT
110 120 130 140 150 160
>>NP_057409 (OMIM: 605467) neurotrophin receptor-interac (621 aa)
initn: 295 init1: 272 opt: 290 Z-score: 190.6 bits: 43.6 E(85289): 0.0007
Smith-Waterman score: 290; 43.2% identity (59.6% similar) in 146 aa overlap (33-165:48-186)
10 20 30 40 50
pF1KB9 ATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEAS-PPA--PEPS-SP--NAA
:: :. :: . : : :. :: :
NP_057 DVTLGFTPEEWGLLDLKQKSLYREVMLENYRNLVSVEYPELQLDPKLDPLPAESPLMNIE
20 30 40 50 60 70
60 70 80 90 100
pF1KB9 VPEA------IPTPRAAASAALELPLGPAPVSVAPQAEAEARST-PGPAGSRLGPETFRQ
: :. . :: : :: : .. ::. ... .. :: ::. ::
NP_057 VVEVLTLNQEVAGPRNAQIQALYAEDGSLSAD-APSEQVQQQGKHPGD------PEAARQ
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB9 RFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRI
:::::::.: .:::::. ::::: .:::.: :.::::.:.:: ::.:. :: :
NP_057 RFRQFRYKDMTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVE
140 150 160 170 180 190
170
pF1KB9 RRRTDVRITG
NP_057 SQHPENCQEVVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVL
200 210 220 230 240 250
>>NP_001265663 (OMIM: 605467) neurotrophin receptor-inte (611 aa)
initn: 295 init1: 272 opt: 289 Z-score: 190.2 bits: 43.5 E(85289): 0.00075
Smith-Waterman score: 289; 42.5% identity (60.6% similar) in 127 aa overlap (40-165:57-176)
10 20 30 40 50 60
pF1KB9 ATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEAIPTPRAAAS
:: :: .. . . :: :
NP_001 AEDFWPVERGIPQDTIPEYPELQLDPKLDPLPAESPLMNIEVVEVLTLNQEVAGPRNAQI
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB9 AALELPLGPAPVSVAPQAEAEARST-PGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQ
:: : .. ::. ... .. :: ::. :::::::::.: .:::::. :
NP_001 QALYAEDGSLSAD-APSEQVQQQGKHPG------DPEAARQRFRQFRYKDMTGPREALDQ
90 100 110 120 130
130 140 150 160 170
pF1KB9 LRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
:::: .:::.: :.::::.:.:: ::.:. :: :
NP_001 LRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQEVVALVEGVTW
140 150 160 170 180 190
NP_001 MSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQDVAVDFSREEW
200 210 220 230 240 250
>>NP_008896 (OMIM: 194534) zinc finger protein 24 isofor (368 aa)
initn: 340 init1: 284 opt: 284 Z-score: 190.1 bits: 42.8 E(85289): 0.00075
Smith-Waterman score: 284; 69.5% identity (84.7% similar) in 59 aa overlap (104-162:48-106)
80 90 100 110 120 130
pF1KB9 LPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAAGPREAFRQLRELS
:: :::::::: :::. ::::: :::::
NP_008 DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFRQRFRQFGYQDSPGPREAVSQLRELC
20 30 40 50 60 70
140 150 160 170
pF1KB9 RQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
: ::::. .:::::.:..: ::..::::.
NP_008 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESELDDP
80 90 100 110 120 130
179 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:56:17 2016 done: Fri Nov 4 17:56:19 2016
Total Scan time: 7.230 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]