FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9644, 179 aa
  1>>>pF1KB9644 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4385+/-0.000816; mu= -2.5280+/- 0.049
 mean_var=267.2668+/-54.341, 0's: 0 Z-trim(117.6): 73  B-trim: 805 in 1/53
 Lambda= 0.078452
 statistics sampled from 18249 (18322) to 18249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.563), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS13269.1 SCAND1 gene_id:51282|Hs108|chr20       ( 179) 1174 144.2 3.9e-35


>>CCDS13269.1 SCAND1 gene_id:51282|Hs108|chr20            (179 aa)
 initn: 1174 init1: 1174 opt: 1174  Z-score: 744.2  bits: 144.2 E(32554): 3.9e-35
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB9 MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLPEASPPAPEPSSPNAAVPEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDAA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB9 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG
              130       140       150       160       170         




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:56:17 2016 done: Fri Nov  4 17:56:17 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]