FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9633, 462 aa
  1>>>pF1KB9633 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3751+/-0.0011; mu= 8.4521+/- 0.067
 mean_var=119.1341+/-22.504, 0's: 0 Z-trim(106.3): 22  B-trim: 9 in 1/50
 Lambda= 0.117505
 statistics sampled from 8902 (8912) to 8902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS6690.1 NFIL3 gene_id:4783|Hs108|chr9           ( 462) 2941 509.9 2.3e-144


>>CCDS6690.1 NFIL3 gene_id:4783|Hs108|chr9                (462 aa)
 initn: 2941 init1: 2941 opt: 2941  Z-score: 2705.4  bits: 509.9 E(32554): 2.3e-144
Smith-Waterman score: 2941; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB9 MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPENKFQIIKQEPMELESYTREPRDDRGSYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ASIYQNYMGNSFSGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQVPKGPIH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPVELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SPVELKHVHATVVKVPEVNSSALPHKLRIKAKAMQIKVEAFDNEFEATQKLSSPIDMTSK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RHFELEKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RHFELEKHSAPSMVHSSLTPFSVQVTNIQDWSLKSEHWHQKELSGKTQNSFKTGVVEMKD
              370       380       390       400       410       420

              430       440       450       460  
pF1KB9 SGYKVSDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG
       ::::::::::::::::::::::::::::::::::::::::::
CCDS66 SGYKVSDPENLYLKQGIANLSAEVVSLKRLIATQPISASDSG
              430       440       450       460  




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:52:06 2016 done: Fri Nov  4 17:52:06 2016
 Total Scan time:  2.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]