FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9616, 223 aa
  1>>>pF1KB9616 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0008+/-0.000285; mu= 3.6340+/- 0.018
 mean_var=169.8500+/-35.076, 0's: 0 Z-trim(124.3): 1  B-trim: 2068 in 1/57
 Lambda= 0.098411
 statistics sampled from 45683 (45684) to 45683 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.536), width:  16
 Scan time:  8.030

The best scores are:                                      opt bits E(85289)
NP_057629 (OMIM: 607177) immediate early response  ( 327)  300 53.4 5.3e-07


>>NP_057629 (OMIM: 607177) immediate early response gene  (327 aa)
 initn: 313 init1: 194 opt: 300  Z-score: 246.7  bits: 53.4 E(85289): 5.3e-07
Smith-Waterman score: 300; 32.1% identity (58.1% similar) in 215 aa overlap (1-205:1-204)

               10        20        30        40        50        60
pF1KB9 MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSARELYLSAKVEALEPEVS
       :: . ::.::...:. :.:.::.::::..::..: .:::.::::..:::    .:   ..
NP_057 MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGL--YLA
               10        20        30        40        50          

               70        80        90         100       110        
pF1KB9 LPAALPSDPRLHPPREAESTAETATPDGEHPFPEPMDT--QEAPTAEETSACCAPR---P
        ::. :. :  . :  .: .:   .  :: : :    .  .  :  :..:.  :::    
NP_057 GPAGTPAPPPQQQP--GEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDE
       60        70          80        90       100       110      

         120       130       140       150       160       170     
pF1KB9 AKVSRKRRSSSLSDGGDAGLVPSKKARLEEKEEEEGASSEVADRLQPPPAQAEGAFPNLA
       . :.     ... .::.:  . .  .:.:       .  ..: :     : . :.::...
NP_057 VPVATVTGVGDVFQGGEADATEAAWSRVE-------GPRQAAAREAEGTAGGWGVFPEVS
        120       130       140              150       160         

         180            190       200       210       220          
pF1KB9 RVLQRRFSGLLNC-----SPAAPPTAPPACEAKPACRPADSMLNVLVRAVVAF       
       :. .:  .  :.      .::: : :   :  .::                         
NP_057 RAARRPCGCPLGGEDPPGTPAATPRAACCCAPQPAEDEPPAPPAVCPRKRCAAGVGGGPA
     170       180       190       200       210       220         

NP_057 GCPAPGSTPLKKPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGGR
     230       240       250       260       270       280         




223 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:44:35 2016 done: Fri Nov  4 17:44:36 2016
 Total Scan time:  8.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]