FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9616, 223 aa
  1>>>pF1KB9616 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8065+/-0.000666; mu= 4.9850+/- 0.040
 mean_var=160.1922+/-31.648, 0's: 0 Z-trim(116.8): 8  B-trim: 0 in 0/53
 Lambda= 0.101334
 statistics sampled from 17415 (17418) to 17415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.535), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS12295.1 IER2 gene_id:9592|Hs108|chr19          ( 223) 1484 227.4 5.7e-60


>>CCDS12295.1 IER2 gene_id:9592|Hs108|chr19               (223 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1190.1  bits: 227.4 E(32554): 5.7e-60
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB9 MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSARELYLSAKVEALEPEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSARELYLSAKVEALEPEVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LPAALPSDPRLHPPREAESTAETATPDGEHPFPEPMDTQEAPTAEETSACCAPRPAKVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPAALPSDPRLHPPREAESTAETATPDGEHPFPEPMDTQEAPTAEETSACCAPRPAKVSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KRRSSSLSDGGDAGLVPSKKARLEEKEEEEGASSEVADRLQPPPAQAEGAFPNLARVLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRRSSSLSDGGDAGLVPSKKARLEEKEEEEGASSEVADRLQPPPAQAEGAFPNLARVLQR
              130       140       150       160       170       180

              190       200       210       220   
pF1KB9 RFSGLLNCSPAAPPTAPPACEAKPACRPADSMLNVLVRAVVAF
       :::::::::::::::::::::::::::::::::::::::::::
CCDS12 RFSGLLNCSPAAPPTAPPACEAKPACRPADSMLNVLVRAVVAF
              190       200       210       220   




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:44:34 2016 done: Fri Nov  4 17:44:35 2016
 Total Scan time:  2.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]