Result of FASTA (ccds) for
pF1KB9431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9431, 524 aa
1>>>pF1KB9431 524 - 524 aa - 524 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1463+/-0.000929; mu= -1.1303+/- 0.056
mean_var=339.8385+/-67.238, 0's: 0 Z-trim(116.3): 19 B-trim: 0 in 0/55
Lambda= 0.069573
statistics sampled from 16902 (16917) to 16902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.52), width: 16
Scan time: 4.140
The best scores are: opt bits E(32554)
CCDS45977.1 PRKCSH gene_id:5589|Hs108|chr19 ( 525) 3580 372.9 4.9e-103
CCDS32911.1 PRKCSH gene_id:5589|Hs108|chr19 ( 528) 3519 366.8 3.5e-101
CCDS74286.1 PRKCSH gene_id:5589|Hs108|chr19 ( 535) 2361 250.6 3.4e-66
>>CCDS45977.1 PRKCSH gene_id:5589|Hs108|chr19 (525 aa)
initn: 2548 init1: 2238 opt: 3580 Z-score: 1963.2 bits: 372.9 E(32554): 4.9e-103
Smith-Waterman score: 3580; 99.8% identity (99.8% similar) in 525 aa overlap (1-524:1-525)
10 20 30 40 50 60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQPKPASPAEEDKMPPYDEQT
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS45 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKPASPAEEDKMPPYDEQT
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB9 QAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEY
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB9 VYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL
430 440 450 460 470 480
480 490 500 510 520
pF1KB9 LCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
490 500 510 520
>>CCDS32911.1 PRKCSH gene_id:5589|Hs108|chr19 (528 aa)
initn: 2530 init1: 2244 opt: 3519 Z-score: 1930.1 bits: 366.8 E(32554): 3.5e-101
Smith-Waterman score: 3519; 98.1% identity (98.3% similar) in 528 aa overlap (1-524:1-528)
10 20 30 40 50 60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQ---PKPASPAEEDKMPPYD
:::::::::::::::::::::::: ::::::::::: :.::::::::::::::
CCDS32 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYD
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB9 EQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTT
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB9 NEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTT
430 440 450 460 470 480
480 490 500 510 520
pF1KB9 VRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
490 500 510 520
>>CCDS74286.1 PRKCSH gene_id:5589|Hs108|chr19 (535 aa)
initn: 2834 init1: 2238 opt: 2361 Z-score: 1301.9 bits: 250.6 E(32554): 3.4e-66
Smith-Waterman score: 3550; 97.9% identity (97.9% similar) in 535 aa overlap (1-524:1-535)
10 20 30 40 50 60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
250 260 270 280 290 300
310 320 330 340
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQPK----------PASPAEE
:::::::::::::::::::::::: :::::::::::::::::: :::::::
CCDS74 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKEAPPPLSPPQPASPAEE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 DKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYS
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 QCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQ
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB9 GPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
490 500 510 520 530
524 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:21:25 2016 done: Thu Nov 3 23:21:26 2016
Total Scan time: 4.140 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]