Result of FASTA (ccds) for
pF1KB9415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9415, 690 aa
1>>>pF1KB9415 690 - 690 aa - 690 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7697+/-0.000978; mu= 12.7075+/- 0.059
mean_var=95.3385+/-19.440, 0's: 0 Z-trim(107.1): 37 B-trim: 334 in 1/48
Lambda= 0.131353
statistics sampled from 9332 (9357) to 9332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.287), width: 16
Scan time: 3.700
The best scores are: opt bits E(32554)
CCDS35375.1 NKRF gene_id:55922|Hs108|chrX ( 690) 4586 879.8 0
CCDS55486.1 NKRF gene_id:55922|Hs108|chrX ( 705) 4586 879.8 0
CCDS34110.1 CDKN2AIP gene_id:55602|Hs108|chr4 ( 580) 320 71.3 4.4e-12
>>CCDS35375.1 NKRF gene_id:55922|Hs108|chrX (690 aa)
initn: 4586 init1: 4586 opt: 4586 Z-score: 4698.2 bits: 879.8 E(32554): 0
Smith-Waterman score: 4586; 100.0% identity (100.0% similar) in 690 aa overlap (1-690:1-690)
10 20 30 40 50 60
pF1KB9 MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPKKQAGSKFHARPRFEPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPKKQAGSKFHARPRFEPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQDSFSIQDGNSQYCDSSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQDSFSIQDGNSQYCDSSGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQTFPESVVAEKQYFIEKLTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQTFPESVVAEKQYFIEKLTAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 IWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIYAPLKEIPPADIPKNKKLLTDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIYAPLKEIPPADIPKNKKLLTDGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQKRIEVRVVRRKFKHTFGEDLVVCQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQKRIEVRVVRRKFKHTFGEDLVVCQI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GMSSYEFPPALKPPEDLVVLGKDASGQPIFNASAKHWTNFVITENANDAIGILNNSASFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GMSSYEFPPALKPPEDLVVLGKDASGQPIFNASAKHWTNFVITENANDAIGILNNSASFN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYGTKKTSKHAAADEALKILQKTQPTYPSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYGTKKTSKHAAADEALKILQKTQPTYPSVK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SSQCHTGSSPRGSGKKKDIKDLVVYENSSNPVCTLNDTAQFNRMTVEYVYERMTGLRWKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSQCHTGSSPRGSGKKKDIKDLVVYENSSNPVCTLNDTAQFNRMTVEYVYERMTGLRWKC
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 KVILESEVIAEAVGVKKTVKYEAAGEAVKTLKKTQPTVINNLKKGAVEDVISRNEIQGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KVILESEVIAEAVGVKKTVKYEAAGEAVKTLKKTQPTVINNLKKGAVEDVISRNEIQGRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 AEEAYKQQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKREGLGLDVERVNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AEEAYKQQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQHKREGLGLDVERVNK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 IAKRDIEQIIRNYARSESHTDLTFSRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IAKRDIEQIIRNYARSESHTDLTFSRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVV
610 620 630 640 650 660
670 680 690
pF1KB9 GRKRRKEDLLDQLKQEGQVGHYELVMPQAN
::::::::::::::::::::::::::::::
CCDS35 GRKRRKEDLLDQLKQEGQVGHYELVMPQAN
670 680 690
>>CCDS55486.1 NKRF gene_id:55922|Hs108|chrX (705 aa)
initn: 4586 init1: 4586 opt: 4586 Z-score: 4698.0 bits: 879.8 E(32554): 0
Smith-Waterman score: 4586; 100.0% identity (100.0% similar) in 690 aa overlap (1-690:16-705)
10 20 30 40
pF1KB9 MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPKK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGFMLPLIFRYSPRLMEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPKK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 QAGSKFHARPRFEPVHFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQDSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QAGSKFHARPRFEPVHFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQDSF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 SIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQTFPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQTFPES
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 VVAEKQYFIEKLTATIWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIYAPLKEIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVAEKQYFIEKLTATIWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIYAPLKEIP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 PADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQKRIEVRVVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQKRIEVRVVRR
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 KFKHTFGEDLVVCQIGMSSYEFPPALKPPEDLVVLGKDASGQPIFNASAKHWTNFVITEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KFKHTFGEDLVVCQIGMSSYEFPPALKPPEDLVVLGKDASGQPIFNASAKHWTNFVITEN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 ANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYGTKKTSKHAAADEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYGTKKTSKHAAADEA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 LKILQKTQPTYPSVKSSQCHTGSSPRGSGKKKDIKDLVVYENSSNPVCTLNDTAQFNRMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LKILQKTQPTYPSVKSSQCHTGSSPRGSGKKKDIKDLVVYENSSNPVCTLNDTAQFNRMT
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB9 VEYVYERMTGLRWKCKVILESEVIAEAVGVKKTVKYEAAGEAVKTLKKTQPTVINNLKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEYVYERMTGLRWKCKVILESEVIAEAVGVKKTVKYEAAGEAVKTLKKTQPTVINNLKKG
490 500 510 520 530 540
530 540 550 560 570 580
pF1KB9 AVEDVISRNEIQGRSAEEAYKQQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVEDVISRNEIQGRSAEEAYKQQIKEDNIGNQLLRKMGWTGGGLGKSGEGIREPISVKEQ
550 560 570 580 590 600
590 600 610 620 630 640
pF1KB9 HKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTFSRELTNDERKQIHQIAQKYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTFSRELTNDERKQIHQIAQKYGL
610 620 630 640 650 660
650 660 670 680 690
pF1KB9 KSKSHGVGHDRYLVVGRKRRKEDLLDQLKQEGQVGHYELVMPQAN
:::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSKSHGVGHDRYLVVGRKRRKEDLLDQLKQEGQVGHYELVMPQAN
670 680 690 700
>>CCDS34110.1 CDKN2AIP gene_id:55602|Hs108|chr4 (580 aa)
initn: 244 init1: 105 opt: 320 Z-score: 330.3 bits: 71.3 E(32554): 4.4e-12
Smith-Waterman score: 320; 31.6% identity (67.5% similar) in 209 aa overlap (117-318:379-580)
90 100 110 120 130 140
pF1KB9 THFASMPRDIYQDYTQDSFSIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQ
.:: ...:. ... . : . . ..:::
CCDS34 SSSSTNTSLLTSKSTSQVAASLLASKSSSQTSGSLVSKSTSLASVSQLASKSSSQTSTSQ
350 360 370 380 390 400
150 160 170 180 190 200
pF1KB9 QANSQSTPEPSPSQT-FPESV----VAEKQYFIEKLTATI-WKNLSNPEMTSGSDKINYT
:.:: . : :.. : .. : .:: :...: :. :: .. . . : ..:.
CCDS34 LP-SKSTSQSSESSVKFSCKLTNEDVKQKQPFFNRLYKTVAWKLVA---VGGFSPNVNHG
410 420 430 440 450 460
210 220 230 240 250 260
pF1KB9 YMLTRCIQACKTNPEYIYAPLKEIPPADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKN
.:. :.: :.. . ...::::. ::.:.::. .. .::.::...:: :: . ::.
CCDS34 ELLNAAIEALKATLDVFFVPLKEL--ADLPQNKSS-QESIVCELRCKSVYLGTGCGKSKE
470 480 490 500 510 520
270 280 290 300 310
pF1KB9 GSRDRATELAVKL-LQKRIEVRVVRRKFKHTFGEDLVVCQIGMSSYEFPPALKPPEDLVV
... :.. :.:: :.:.. :.. .::.. . ::::. . ..::::: :..:.
CCDS34 NAKAVASREALKLFLKKKVVVKICKRKYRGSEIEDLVLLDEESRPVNLPPALKHPQELL
530 540 550 560 570 580
320 330 340 350 360 370
pF1KB9 LGKDASGQPIFNASAKHWTNFVITENANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCR
690 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:46:32 2016 done: Sat Nov 5 01:46:32 2016
Total Scan time: 3.700 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]