Result of FASTA (omim) for
pF1KB9414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9414, 713 aa
1>>>pF1KB9414 713 - 713 aa - 713 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5488+/-0.00036; mu= 2.8918+/- 0.023
mean_var=269.8781+/-56.254, 0's: 0 Z-trim(122.4): 12 B-trim: 524 in 1/55
Lambda= 0.078071
statistics sampled from 40410 (40423) to 40410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.474), width: 16
Scan time: 12.940
The best scores are: opt bits E(85289)
NP_001177779 (OMIM: 604911) CCR4-NOT transcription ( 713) 4901 565.5 2.6e-160
XP_016867724 (OMIM: 604911) PREDICTED: CCR4-NOT tr ( 713) 4901 565.5 2.6e-160
NP_001177778 (OMIM: 604911) CCR4-NOT transcription ( 710) 4859 560.8 6.8e-159
NP_001177776 (OMIM: 604911) CCR4-NOT transcription ( 642) 3773 438.4 4.2e-122
NP_037448 (OMIM: 604911) CCR4-NOT transcription co ( 639) 3731 433.7 1.1e-120
NP_001177777 (OMIM: 604911) CCR4-NOT transcription ( 575) 3708 431.0 6.1e-120
NP_001008226 (OMIM: 604911) CCR4-NOT transcription ( 572) 3666 426.3 1.6e-118
>>NP_001177779 (OMIM: 604911) CCR4-NOT transcription com (713 aa)
initn: 4901 init1: 4901 opt: 4901 Z-score: 2999.2 bits: 565.5 E(85289): 2.6e-160
Smith-Waterman score: 4901; 100.0% identity (100.0% similar) in 713 aa overlap (1-713:1-713)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
610 620 630 640 650 660
670 680 690 700 710
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
670 680 690 700 710
>>XP_016867724 (OMIM: 604911) PREDICTED: CCR4-NOT transc (713 aa)
initn: 4901 init1: 4901 opt: 4901 Z-score: 2999.2 bits: 565.5 E(85289): 2.6e-160
Smith-Waterman score: 4901; 100.0% identity (100.0% similar) in 713 aa overlap (1-713:1-713)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
610 620 630 640 650 660
670 680 690 700 710
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
670 680 690 700 710
>>NP_001177778 (OMIM: 604911) CCR4-NOT transcription com (710 aa)
initn: 4861 init1: 3025 opt: 4859 Z-score: 2973.7 bits: 560.8 E(85289): 6.8e-159
Smith-Waterman score: 4859; 99.4% identity (99.6% similar) in 713 aa overlap (1-713:1-710)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
:::::::::::::::::::::::::::::: .::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
600 610 620 630 640 650
670 680 690 700 710
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
660 670 680 690 700 710
>>NP_001177776 (OMIM: 604911) CCR4-NOT transcription com (642 aa)
initn: 3743 init1: 3743 opt: 3773 Z-score: 2313.2 bits: 438.4 E(85289): 4.2e-122
Smith-Waterman score: 4272; 90.0% identity (90.0% similar) in 713 aa overlap (1-713:1-642)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::
NP_001 VA----------------------------------------------------------
610 620 630 640 650 660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
550 560 570 580
670 680 690 700 710
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
590 600 610 620 630 640
>>NP_037448 (OMIM: 604911) CCR4-NOT transcription comple (639 aa)
initn: 3701 init1: 1865 opt: 3731 Z-score: 2287.6 bits: 433.7 E(85289): 1.1e-120
Smith-Waterman score: 4230; 89.5% identity (89.6% similar) in 713 aa overlap (1-713:1-639)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
:::::::::::::::::::::::::::::: .::::::::::::::::::::::::::
NP_037 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::
NP_037 VA----------------------------------------------------------
610 620 630 640 650 660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_037 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
540 550 560 570 580
670 680 690 700 710
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
590 600 610 620 630
>>NP_001177777 (OMIM: 604911) CCR4-NOT transcription com (575 aa)
initn: 3708 init1: 3708 opt: 3708 Z-score: 2274.3 bits: 431.0 E(85289): 6.1e-120
Smith-Waterman score: 3708; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::
NP_001 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA
550 560 570
>>NP_001008226 (OMIM: 604911) CCR4-NOT transcription com (572 aa)
initn: 3668 init1: 1850 opt: 3666 Z-score: 2248.7 bits: 426.3 E(85289): 1.6e-118
Smith-Waterman score: 3666; 99.3% identity (99.4% similar) in 542 aa overlap (1-542:1-539)
10 20 30 40 50 60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
:::::::::::::::::::::::::::::: .::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
250 260 270 280 290
310 320 330 340 350 360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
::
NP_001 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA
540 550 560 570
713 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:14:14 2016 done: Thu Nov 3 23:14:15 2016
Total Scan time: 12.940 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]