FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8991, 155 aa
  1>>>pF1KB8991 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5214+/-0.000596; mu= 11.4209+/- 0.036
 mean_var=74.1641+/-14.821, 0's: 0 Z-trim(113.0): 9  B-trim: 15 in 2/51
 Lambda= 0.148928
 statistics sampled from 13667 (13672) to 13667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.42), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS34935.1 AARD gene_id:441376|Hs108|chr8         ( 155) 1034 230.4 3.5e-61


>>CCDS34935.1 AARD gene_id:441376|Hs108|chr8              (155 aa)
 initn: 1034 init1: 1034 opt: 1034  Z-score: 1211.8  bits: 230.4 E(32554): 3.5e-61
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB8 MGPGDFRRCRERISQGLQGLPGRAELWFPPRPACDFFGDGRSTDIQEEALAASPLLEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPGDFRRCRERISQGLQGLPGRAELWFPPRPACDFFGDGRSTDIQEEALAASPLLEDLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RRLTRAFQWAVQRAISRRVQEAAAAAAAREEQSWTGVEATLARLRAELVEMHFQNHQLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RRLTRAFQWAVQRAISRRVQEAAAAAAAREEQSWTGVEATLARLRAELVEMHFQNHQLAR
               70        80        90       100       110       120

              130       140       150     
pF1KB8 TLLDLNMKVQQLKKEYELEITSDSQSPKDDAANPE
       :::::::::::::::::::::::::::::::::::
CCDS34 TLLDLNMKVQQLKKEYELEITSDSQSPKDDAANPE
              130       140       150     




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:50:16 2016 done: Sat Nov  5 00:50:16 2016
 Total Scan time:  1.900 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]