Result of FASTA (ccds) for
pF1KB8956
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8956, 333 aa
1>>>pF1KB8956 333 - 333 aa - 333 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1248+/-0.000724; mu= 9.6800+/- 0.044
mean_var=155.4916+/-32.222, 0's: 0 Z-trim(114.8): 167 B-trim: 853 in 1/49
Lambda= 0.102854
statistics sampled from 15163 (15338) to 15163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.471), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS3410.1 2 gene_id:579|Hs108|chr4 ( 333) 2213 339.5 2.3e-93
CCDS41558.1 3 gene_id:159296|Hs108|chr10 ( 364) 384 68.1 1.2e-11
CCDS59095.1 1 gene_id:4824|Hs108|chr8 ( 159) 367 65.3 3.9e-11
CCDS6042.1 1 gene_id:4824|Hs108|chr8 ( 234) 367 65.4 5.1e-11
CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10 ( 357) 368 65.7 6.3e-11
CCDS4387.1 5 gene_id:1482|Hs108|chr5 ( 324) 364 65.1 8.9e-11
>>CCDS3410.1 2 gene_id:579|Hs108|chr4 (333 aa)
initn: 2213 init1: 2213 opt: 2213 Z-score: 1789.6 bits: 339.5 E(32554): 2.3e-93
Smith-Waterman score: 2213; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
250 260 270 280 290 300
310 320 330
pF1KB8 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
:::::::::::::::::::::::::::::::::
CCDS34 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
310 320 330
>>CCDS41558.1 3 gene_id:159296|Hs108|chr10 (364 aa)
initn: 295 init1: 295 opt: 384 Z-score: 322.4 bits: 68.1 E(32554): 1.2e-11
Smith-Waterman score: 384; 49.0% identity (68.7% similar) in 147 aa overlap (190-330:131-274)
160 170 180 190 200 210
pF1KB8 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV
:: . :: ::::..:. :. ::.:::
CCDS41 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB8 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA----
:::::::..:::::.::: ::.::::: ::::::::::::: ::... .: .:
CCDS41 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP
170 180 190 200 210 220
280 290 300 310 320 330
pF1KB8 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
: ..::: ::::: . :. .. : . . : : .:... .. ::::
CCDS41 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAAAAAA
230 240 250 260 270
CCDS41 AAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSG
280 290 300 310 320 330
>>CCDS59095.1 1 gene_id:4824|Hs108|chr8 (159 aa)
initn: 440 init1: 355 opt: 367 Z-score: 313.5 bits: 65.3 E(32554): 3.9e-11
Smith-Waterman score: 392; 53.2% identity (72.2% similar) in 126 aa overlap (199-322:42-155)
170 180 190 200 210 220
pF1KB8 PRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQ
: .:: .:::::::::.::.::::.:.::
CCDS59 AETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQ
20 30 40 50 60 70
230 240 250 260 270 280
pF1KB8 RYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRD
.:::.:::: :: .:::::::::::::::::::::.:....: : .
CCDS59 KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGD------------LEKH
80 90 100 110
290 300 310 320 330
pF1KB8 DQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWALSTCAAAAGTQ
.. : :.. ::. . :: :::: ::. .:.
CCDS59 SSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
120 130 140 150
>>CCDS6042.1 1 gene_id:4824|Hs108|chr8 (234 aa)
initn: 480 init1: 355 opt: 367 Z-score: 311.2 bits: 65.4 E(32554): 5.1e-11
Smith-Waterman score: 396; 39.6% identity (62.3% similar) in 212 aa overlap (136-322:32-230)
110 120 130 140 150 160
pF1KB8 RCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD
.:. ...: :. .. :.. . : :. : .
CCDS60 LRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPE
10 20 30 40 50 60
170 180 190 200
pF1KB8 GVGPR---GAHVSALCSGAGGGGGSGPAGVAEEEEE--------------------PAAP
: : ::. . : .: .. . . .:: : : : .:
CCDS60 PEGGRSRAGAQNDQLSTGPRAAPEEAET-LAETEPERHLGSYLLDSENTSGALPRLPQTP
70 80 90 100 110 120
210 220 230 240 250 260
pF1KB8 KPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTK
: .:::::::::.::.::::.:.::.:::.:::: :: .::::::::::::::::::::
CCDS60 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
130 140 150 160 170 180
270 280 290 300 310 320
pF1KB8 RRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPG
:.:....: . :. .. .: . :.. ::. . :: :::: ::. .
CCDS60 RKQLSSEL---GDLEKHSSLPALKE---------EAFSRASLVSVYNSYPYYPYLYCVGS
190 200 210 220
330
pF1KB8 WALSTCAAAAGTQ
:.
CCDS60 WSPAFW
230
>>CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10 (357 aa)
initn: 375 init1: 271 opt: 368 Z-score: 309.6 bits: 65.7 E(32554): 6.3e-11
Smith-Waterman score: 368; 33.0% identity (55.5% similar) in 330 aa overlap (10-319:29-346)
10 20 30
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAP-----
. :::. .:: ..: :. .: :
CCDS41 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHR---PPPKPQPPPRTLFA
10 20 30 40 50
40 50 60 70 80
pF1KB8 GGTAASVAAAPAVCCWRLFGERDAG-ALGGAEDSLLASP----AGTRTA--AGRTAESPE
..::..::: :. . : :: ::. . : :: : . : : : .::
CCDS41 PASAAAAAAAAAAAAAKGALEGAAGFALSQVGD--LAFPRFEIPAQRFALPAHYLERSPA
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB8 GWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSE
: . .. : :. .. . ... . .: : :. : ..: ..: .:
CCDS41 WWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD-HKELDSKSPDE
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 MSASVSGDRSPRTEDDGV-GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR
. : .. . : ... : :: :.: ..: :. . :. :..:: :::.
CCDS41 IILEESDSEESKKEGEAAPGAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKK
180 190 200 210 220
210 220 230 240 250 260
pF1KB8 SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAA
.:..::..:::.:: :. .::::. ::: :::::.:::::::::::::: : :: :.::
CCDS41 TRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR-QLAA
230 240 250 260 270 280
270 280 290 300 310 320
pF1KB8 DL----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYP---YYCLPGW
.: :. : : . : : .: .... . . . :: .: :: :
CCDS41 ELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVV
290 300 310 320 330 340
330
pF1KB8 ALSTCAAAAGTQ
CCDS41 SSVPLLRPV
350
>>CCDS4387.1 5 gene_id:1482|Hs108|chr5 (324 aa)
initn: 364 init1: 265 opt: 364 Z-score: 307.0 bits: 65.1 E(32554): 8.9e-11
Smith-Waterman score: 364; 46.9% identity (65.7% similar) in 143 aa overlap (194-327:123-265)
170 180 190 200 210 220
pF1KB8 DDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAA---FSHAQVFE
:. : : .:: .: : ::.:::.:
CCDS43 YPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE
100 110 120 130 140 150
230 240 250 260 270
pF1KB8 LERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR-RQ-MAADLLA----SA
:::::..:::::.::: .::. :::: ::::::::::::: :: :: .. .:..
CCDS43 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPP
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 PAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
: :...:: ::::: . . : . :.: : : ::.. ..:.
CCDS43 PPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTA
220 230 240 250 260 270
CCDS43 AYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
280 290 300 310 320
333 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:48:30 2016 done: Sat Nov 5 00:48:30 2016
Total Scan time: 2.340 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]