Result of FASTA (ccds) for
pF1KB8950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8950, 324 aa
1>>>pF1KB8950 324 - 324 aa - 324 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0716+/-0.000782; mu= 6.7603+/- 0.048
mean_var=223.1304+/-46.611, 0's: 0 Z-trim(116.3): 164 B-trim: 937 in 1/52
Lambda= 0.085861
statistics sampled from 16764 (16938) to 16764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.52), width: 16
Scan time: 2.890
The best scores are: opt bits E(32554)
CCDS4387.1 5 gene_id:1482|Hs108|chr5 ( 324) 2213 286.0 2.8e-77
CCDS54949.1 5 gene_id:1482|Hs108|chr5 ( 151) 746 103.9 8.4e-23
CCDS54950.1 5 gene_id:1482|Hs108|chr5 ( 112) 742 103.3 9.6e-23
CCDS41558.1 3 gene_id:159296|Hs108|chr10 ( 364) 713 100.2 2.6e-21
CCDS42855.1 4 gene_id:644524|Hs108|chr20 ( 354) 480 71.3 1.3e-12
CCDS13145.1 2 gene_id:4821|Hs108|chr20 ( 273) 466 69.5 3.5e-12
CCDS9660.1 8 gene_id:26257|Hs108|chr14 ( 239) 433 65.3 5.4e-11
>>CCDS4387.1 5 gene_id:1482|Hs108|chr5 (324 aa)
initn: 2213 init1: 2213 opt: 2213 Z-score: 1500.8 bits: 286.0 E(32554): 2.8e-77
Smith-Waterman score: 2213; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDL
250 260 270 280 290 300
310 320
pF1KB8 NAVQSPGIPQSNSGVSTLHGIRAW
::::::::::::::::::::::::
CCDS43 NAVQSPGIPQSNSGVSTLHGIRAW
310 320
>>CCDS54949.1 5 gene_id:1482|Hs108|chr5 (151 aa)
initn: 742 init1: 742 opt: 746 Z-score: 522.9 bits: 103.9 E(32554): 8.4e-23
Smith-Waterman score: 746; 95.8% identity (96.6% similar) in 118 aa overlap (1-118:1-117)
10 20 30 40 50 60
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV
::::::::::::::::::::::::::::::::::::::::::::::::::: : : .
CCDS54 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKG-CELPRGQ
70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST
CCDS54 RPPVLFSSALSQPDFLQMLSETCRWLPVHLAE
120 130 140 150
>>CCDS54950.1 5 gene_id:1482|Hs108|chr5 (112 aa)
initn: 742 init1: 742 opt: 742 Z-score: 521.8 bits: 103.3 E(32554): 9.6e-23
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKA
70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST
>>CCDS41558.1 3 gene_id:159296|Hs108|chr10 (364 aa)
initn: 680 init1: 491 opt: 713 Z-score: 496.0 bits: 100.2 E(32554): 2.6e-21
Smith-Waterman score: 861; 47.3% identity (65.2% similar) in 376 aa overlap (1-324:2-364)
10 20 30 40 50
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA-G
:.::: .: ::::::::::::::.. . .: .:.: :: . . ::::: . .. :
CCDS41 MMLPSP-VTSTPFSVKDILNLEQQHQHFHGA-HLQADLEHHFHSAPCMLAAAEGTQFSDG
10 20 30 40 50
60 70 80 90 100
pF1KB8 PEAAAPG-------LPELRAELGRAPSPAKCASAFPAA----PAFYPRAYSD-PDPAKDP
: : : : :.. : . : ... . :. . . :. ..:
CCDS41 GEEDEEDEGEKLSYLNSLAAADGHGDS-GLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD-
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 RAEKKELCALQKAVEL--EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLS
:..:. : :.:..: . :...:::. : :::::::::::::.:::::::::::::
CCDS41 RSQKS--CQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 APERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLV
::::..::: :::::::::::::::::::::::::..::: : ::::: ::.::::::
CCDS41 APEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEL-GAHAPPPPP-RRVAVPVLV
180 190 200 210 220 230
230 240 250 260
pF1KB8 RDGKPCLGDSAP-YAPAYGVGLNPYGYNAYPAYPGYGG---------------AACSPGY
::::::. :: :. :.:: . :.::..::: :::. :: : .:
CCDS41 RDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAY-GYGNSAAAAAAAAAAAAAAAAYSSSY
240 250 260 270 280 290
270 280 290 300 310
pF1KB8 SCTAAYPAG-----------PSPAQPATAAANNN-FVNFGVGDLNAVQSPGIPQ-----S
.: ::::: . ::: .::... ::: :..:.. : : : .
CCDS41 GC--AYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVN--VSNLGGFGSGGSAQPLHQGT
300 310 320 330 340
320
pF1KB8 NSGVS----TLHGIRAW
.:.. ::.:::::
CCDS41 AAGAACAQGTLQGIRAW
350 360
>>CCDS42855.1 4 gene_id:644524|Hs108|chr20 (354 aa)
initn: 484 init1: 335 opt: 480 Z-score: 340.2 bits: 71.3 E(32554): 1.3e-12
Smith-Waterman score: 484; 42.7% identity (62.9% similar) in 248 aa overlap (9-236:51-294)
10 20 30
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLE
: : .. .. .: : : ::. .:
CCDS42 EETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAA
30 40 50 60 70 80
40 50 60 70 80
pF1KB8 ATLAPSSCMLAAFK--PEAYAGPEAAAP-----GLPELRAELGRAPSPAKCASA---FPA
:. : .. :... : . :..: :: .. .:: . . ..: . :
CCDS42 AAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNM-GELPAYTDGMRGGAATGWYGA
90 100 110 120 130
90 100 110 120 130 140
pF1KB8 APAFYPRAYSDPDPAKDPRA--EKKELCALQKAVELEKTEAD-NAERPRARRRRKPRVLF
: :: ::. . : : . . .: .. :. . .: : ::: ::::
CCDS42 NPD--PR-YSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLF
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB8 SQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELV
:::::::::::::::.:::::::..:::...:: :::::::::.::: ::: .:.. . .
CCDS42 SQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQL
200 210 220 230 240 250
210 220 230 240 250
pF1KB8 ----GL-PPPPPPPA-RRIAVPVLVRDGKPCL-GDSAPYAPAYGVGLNPYGYNAYPAYPG
:: :::::::. ::.::::::.::::: : :.:
CCDS42 QQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELS
260 270 280 290 300 310
260 270 280 290 300 310
pF1KB8 YGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTL
CCDS42 PSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
320 330 340 350
>>CCDS13145.1 2 gene_id:4821|Hs108|chr20 (273 aa)
initn: 383 init1: 348 opt: 466 Z-score: 332.2 bits: 69.5 E(32554): 3.5e-12
Smith-Waterman score: 466; 36.9% identity (60.2% similar) in 279 aa overlap (8-275:6-264)
10 20 30 40 50 60
pF1KB8 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
: : :::::::.: . . ....: : . .: .: :::
CCDS13 MSLTNTKTGFSVKDILDLPDTNDEEGSVAEGPE--EENEGP--------EPAKRAGPL
10 20 30 40
70 80 90 100 110
pF1KB8 A-----AAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCA
. :. .:: . .: : . . .. . : .: ... : :
CCDS13 GQGALDAVQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL
.. . ..: . ... : ..:: :::::.::.:::::::.::::::::::..:::..
CCDS13 DESPDNDKETPGGGGD---AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 KLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSA
.:: :::::::::.::: :: : .. .:.. :: : ::.:::::::::::: . .:
CCDS13 RLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSP-----RRVAVPVLVRDGKPCHALKA
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 P--YAPAYGVGLNPYGYNA----YPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAAN
: .. .:. .:.: . : . ..: .: : .:.:
CCDS13 QDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQY--PTAHPLVQAQQWTW
230 240 250 260 270
290 300 310 320
pF1KB8 NNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
>>CCDS9660.1 8 gene_id:26257|Hs108|chr14 (239 aa)
initn: 470 init1: 318 opt: 433 Z-score: 310.8 bits: 65.3 E(32554): 5.4e-11
Smith-Waterman score: 480; 41.0% identity (55.4% similar) in 249 aa overlap (59-289:18-238)
30 40 50 60 70 80
pF1KB8 AAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA
:: : ::. . : :::.: ::. . .
CCDS96 MATSGRLSFTVRSLLDLPEQDAQHLPRREPE-PRAPQPDPCAAWLDS
10 20 30 40
90 100 110 120 130
pF1KB8 APAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRAR---------RRR
. :: :: . :: . :...:: :: .:.
CCDS96 ERGHYPS--SDESS-------------------LETSPPDSSQRPSARPASPGSDAEKRK
50 60 70 80
140 150 160 170 180 190
pF1KB8 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQD
: :::::.::. ::::::.::::::::::.::::.:.:: :::::::::.::: :: :
CCDS96 KRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAP
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB8 QTLELVGLPPPP-----PPPARRIAVPVLVRDGKPCLG----DSAPYAPAYGVGLNPYGY
. : : : ::..::::::::.:: : . . : : : .
CCDS96 GAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAA
150 160 170 180 190 200
260 270 280 290 300 310
pF1KB8 NAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQ
:.::..: :: : . .:: :.:: .. :
CCDS96 CPLPGYPAFG-----PG-SALGLFPAYQHLASPALVSWNW
210 220 230
320
pF1KB8 SNSGVSTLHGIRAW
324 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:47:53 2016 done: Sat Nov 5 00:47:54 2016
Total Scan time: 2.890 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]