FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8936, 285 aa
  1>>>pF1KB8936 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4629+/-0.00059; mu= 14.9078+/- 0.036
 mean_var=73.2277+/-14.606, 0's: 0 Z-trim(113.0): 23  B-trim: 10 in 1/50
 Lambda= 0.149878
 statistics sampled from 13649 (13669) to 13649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS13384.1 NEURL2 gene_id:140825|Hs108|chr20      ( 285) 1952 430.6 6.4e-121


>>CCDS13384.1 NEURL2 gene_id:140825|Hs108|chr20           (285 aa)
 initn: 1952 init1: 1952 opt: 1952  Z-score: 2284.3  bits: 430.6 E(32554): 6.4e-121
Smith-Waterman score: 1952; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KB8 MAAASEPVDSGALWGLERPEPPPTRFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAASEPVDSGALWGLERPEPPPTRFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 APGQVFLVEIEEKELGWCGHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APGQVFLVEIEEKELGWCGHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RVPREGRPEAEAAAPSRPPTLLVEPYLRIEQFRIPRDRLVGRSRPGLYSHLLDQLYELNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVPREGRPEAEAAAPSRPPTLLVEPYLRIEQFRIPRDRLVGRSRPGLYSHLLDQLYELNV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVR
              190       200       210       220       230       240

              250       260       270       280     
pF1KB8 LVQLEYGLPSLQTLCRLVIQRSMVHRLAIDGLHLPKELKDFCKYE
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVQLEYGLPSLQTLCRLVIQRSMVHRLAIDGLHLPKELKDFCKYE
              250       260       270       280     




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:04:55 2016 done: Sat Nov  5 20:04:56 2016
 Total Scan time:  2.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]