Result of FASTA (omim) for
pF1KB8902
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8902, 234 aa
1>>>pF1KB8902 234 - 234 aa - 234 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8088+/-0.000316; mu= 5.4160+/- 0.020
mean_var=201.0421+/-40.004, 0's: 0 Z-trim(123.0): 237 B-trim: 0 in 0/60
Lambda= 0.090455
statistics sampled from 41748 (42018) to 41748 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.493), width: 16
Scan time: 7.900
The best scores are: opt bits E(85289)
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 1574 216.7 2.7e-56
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 1002 141.9 6e-34
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 367 59.4 8.9e-09
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 316 52.7 8.4e-07
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 303 51.1 3.1e-06
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 294 49.7 5.2e-06
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 282 48.2 1.7e-05
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 282 48.2 1.7e-05
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 281 48.2 2.4e-05
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 280 48.0 2.4e-05
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 278 47.7 2.7e-05
NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 278 47.8 3e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 279 48.0 3.1e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 279 48.0 3.1e-05
NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 278 47.8 3.2e-05
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 275 47.4 3.8e-05
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 272 46.9 4.1e-05
NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281) 272 46.9 4.3e-05
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 263 45.7 9.7e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 266 46.3 0.0001
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 266 46.3 0.0001
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 266 46.3 0.0001
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 266 46.3 0.0001
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 266 46.3 0.0001
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 266 46.3 0.0001
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 266 46.3 0.0001
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 264 46.0 0.0001
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 259 45.1 0.00012
NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 259 45.2 0.00013
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 257 45.0 0.00017
XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 251 44.0 0.00023
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 253 44.4 0.00023
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 253 44.4 0.00023
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 253 44.4 0.00024
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 254 44.6 0.00025
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 253 44.5 0.00027
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 253 44.5 0.00027
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 251 44.1 0.00028
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 251 44.3 0.00037
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 249 44.0 0.00041
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 247 43.7 0.00048
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 244 43.4 0.00069
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 235 41.9 0.00084
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 235 41.9 0.00084
>>NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 isof (234 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 1131.8 bits: 216.7 E(85289): 2.7e-56
Smith-Waterman score: 1574; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)
10 20 30 40 50 60
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
190 200 210 220 230
>>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i (159 aa)
initn: 1002 init1: 1002 opt: 1002 Z-score: 730.5 bits: 141.9 E(85289): 6e-34
Smith-Waterman score: 1002; 97.4% identity (98.1% similar) in 155 aa overlap (80-234:5-159)
50 60 70 80 90 100
pF1KB8 RQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENT
:. : ::::::::::::::::::::::::
NP_001 MLRVPEPRPGEAETLAETEPERHLGSYLLDSENT
10 20 30
110 120 130 140 150 160
pF1KB8 SGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 IWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSW
100 110 120 130 140 150
230
pF1KB8 SPAFW
:::::
NP_001 SPAFW
>>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3 (333 aa)
initn: 480 init1: 355 opt: 367 Z-score: 278.5 bits: 59.4 E(85289): 8.9e-09
Smith-Waterman score: 396; 39.6% identity (62.3% similar) in 212 aa overlap (32-230:136-322)
10 20 30 40 50 60
pF1KB8 LRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPE
.:. ...: :. .. :.. . : :. : .
NP_001 RCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD
110 120 130 140 150 160
70 80 90 100 110 120
pF1KB8 PEGGRSRAGAQNDQLSTGPRAAPEEAET-LAETEPERHLGSYLLDSENTSGALPRLPQTP
: : ::. . : .: .. . . .:: : : : .:
NP_001 GVGPR---GAHVSALCSGAGGGGGSGPAGVAEEEEE--------------------PAAP
170 180 190 200
130 140 150 160 170 180
pF1KB8 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
: .:::::::::.::.::::.:.::.:::.:::: :: .::::::::::::::::::::
NP_001 KPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTK
210 220 230 240 250 260
190 200 210 220
pF1KB8 RKQLSSEL---GDLEKHSSLPALKE---------EAFSRASLVSVYNSYPYYPYLYCVGS
:.:....: . :. .. .: . :.. ::. . :: :::: ::. .
NP_001 RRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPG
270 280 290 300 310 320
230
pF1KB8 WSPAFW
:.
NP_001 WALSTCAAAAGTQ
330
>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa)
initn: 306 init1: 257 opt: 316 Z-score: 243.1 bits: 52.7 E(85289): 8.4e-07
Smith-Waterman score: 316; 38.7% identity (62.8% similar) in 191 aa overlap (17-198:27-205)
10 20 30 40
pF1KB8 MLRVPEPRPGEAKAEGAAPPTP---SKPLT-SFLIQDILRDGAQ-RQGGR
:: : : ..: . ..: .: :.. ...:
NP_001 MLLSPVTSTPFSVKDILRLERERSCPAASPHPRVRKSPENFQYLRMDAEPRGSEVHNAGG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 TSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTG-PRAAPEEAETLA--ETEPERHLGSY
...:. : :: :: .: . : : :. . . : :. ::: .:.
NP_001 GGGDRKLDGS-----EPPGGPCEAVLEMDAERMGEPQPGLNAASPLGGGTRVPERGVGN-
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 LLDSENTSGALPRLPQTPKQPQKRS-RAAFSHTQVIELERKFSHQKYLSAPERAHLAKNL
..... :. : : :: :.:. :. ::..::. :::.:..:.::::::: :::. :
NP_001 --SGDSVRGG--RSEQ-PKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASAL
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 KLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYP
.:: ::::::::::::: ::.. .. : .: : :
NP_001 QLTSTQVKIWFQNRRYKCKRQRQDKSL-ELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAP
170 180 190 200 210 220
230
pF1KB8 YLYCVGSWSPAFW
NP_001 AFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQ
230 240 250 260 270 280
>>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa)
initn: 268 init1: 268 opt: 303 Z-score: 232.9 bits: 51.1 E(85289): 3.1e-06
Smith-Waterman score: 303; 42.5% identity (62.7% similar) in 153 aa overlap (84-228:104-254)
60 70 80 90 100 110
pF1KB8 PEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGS-YLLDSENTSGA
:.: : :. .: : : : .:.:
NP_660 NSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGD
80 90 100 110 120 130
120 130 140 150 160
pF1KB8 LPRLPQTPKQPQKRSR----AAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV
. . ..:. ::: . ::..::.::::.:..:.::::::: :::..:::: :::
NP_660 C-KAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQV
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB8 KIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEA---FSRASLVSVYNSYPYYPYLYC
:::::::::: ::.. .. : .: :. : .. : . : . : : : :
NP_660 KIWFQNRRYKCKRQRQDKSL-ELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS
200 210 220 230 240 250
230
pF1KB8 VGSWSPAFW
::.
NP_660 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATT
260 270 280 290 300 310
>>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom (239 aa)
initn: 274 init1: 274 opt: 294 Z-score: 228.9 bits: 49.7 E(85289): 5.2e-06
Smith-Waterman score: 301; 40.8% identity (60.5% similar) in 152 aa overlap (51-199:27-161)
30 40 50 60 70
pF1KB8 TPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPE-PEPEPEGGRSRAGAQNDQLSTG
.:.:::. :.:.: .: :. :
NP_055 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDP------CAAWLDS-ERG
10 20 30 40
80 90 100 110 120 130
pF1KB8 PRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIEL
: :. :: : :: . .: : : . . .:. :. ::..:..::
NP_055 HY--PSSDESSLETSPP--------DSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLEL
50 60 70 80 90
140 150 160 170 180 190
pF1KB8 ERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL--SSELGDLEKHSSL
::.: .:.::::::: .::. :.:: :::::::::.::: :: . ..: :: . :
NP_055 ERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAEL
100 110 120 130 140 150
200 210 220 230
pF1KB8 PALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
:
NP_055 HAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFGPGSA
160 170 180 190 200 210
>>NP_005510 (OMIM: 600647) homeobox protein HMX2 [Homo s (273 aa)
initn: 269 init1: 205 opt: 282 Z-score: 219.7 bits: 48.2 E(85289): 1.7e-05
Smith-Waterman score: 282; 33.1% identity (55.6% similar) in 239 aa overlap (9-228:30-257)
10 20 30
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGA
:.:: : .. :. .. :. .. ::
NP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW
10 20 30 40 50 60
40 50 60 70 80
pF1KB8 Q--------RQGGRTSSQRQRDPEPEP---EPEPEGGRSRAGAQNDQLSTGPRAAPEEAE
. ..: . .. ... : : : :. :: . .: : : .: ...
NP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGG-----LERTPFLSPSHSD
70 80 90 100 110
90 100 110 120 130 140
pF1KB8 TLAETEPERHLGSYLLDSENTSGALPRLPQTPKQP---QKRSRAAFSHTQVIELERKFSH
. : :: : . : . .. :: . .: .:..:..::..:: .:: :.
NP_005 F--KEEKERLLPA---GSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDM
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLE-KHSSLPALKEE-
..:::. ::: ::..:.::::::: :::::: : :: :::.:: . :.: .:
NP_005 KRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR-QLSAELEAANMAHASAQTLVSMP
180 190 200 210 220
210 220 230
pF1KB8 -AFSRASL--VSVYNSYPYYPYLYCVGSWSPAFW
.: .:: : : : . :: ::
NP_005 LVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY
230 240 250 260 270
>>XP_005269800 (OMIM: 600647) PREDICTED: homeobox protei (273 aa)
initn: 269 init1: 205 opt: 282 Z-score: 219.7 bits: 48.2 E(85289): 1.7e-05
Smith-Waterman score: 282; 33.1% identity (55.6% similar) in 239 aa overlap (9-228:30-257)
10 20 30
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGA
:.:: : .. :. .. :. .. ::
XP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW
10 20 30 40 50 60
40 50 60 70 80
pF1KB8 Q--------RQGGRTSSQRQRDPEPEP---EPEPEGGRSRAGAQNDQLSTGPRAAPEEAE
. ..: . .. ... : : : :. :: . .: : : .: ...
XP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGPGG-----LERTPFLSPSHSD
70 80 90 100 110
90 100 110 120 130 140
pF1KB8 TLAETEPERHLGSYLLDSENTSGALPRLPQTPKQP---QKRSRAAFSHTQVIELERKFSH
. : :: : . : . .. :: . .: .:..:..::..:: .:: :.
XP_005 F--KEEKERLLPA---GSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDM
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLE-KHSSLPALKEE-
..:::. ::: ::..:.::::::: :::::: : :: :::.:: . :.: .:
XP_005 KRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR-QLSAELEAANMAHASAQTLVSMP
180 190 200 210 220
210 220 230
pF1KB8 -AFSRASL--VSVYNSYPYYPYLYCVGSWSPAFW
.: .:: : : : . :: ::
XP_005 LVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY
230 240 250 260 270
>>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein (387 aa)
initn: 251 init1: 194 opt: 281 Z-score: 217.1 bits: 48.2 E(85289): 2.4e-05
Smith-Waterman score: 288; 32.7% identity (55.2% similar) in 223 aa overlap (6-223:119-321)
10 20 30
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDIL
.: : . :.: .: .::::.:::
NP_064 HHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRTSTSSFLIKDIL
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB8 RDGAQRQGGRTSSQRQRDPEPEPEPEP----EGGRSRAGAQNDQLSTGPRAAPEEAETLA
:. . : .:. :. : :. : . .... . : :....
NP_064 GDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKR---EDSQSDI
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB8 ETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSA
. . .. :. . : : : : :.:.: .:.::: :. .:::.: .:::::.
NP_064 KCHGTKEEGDREITSSRES---P--PVRAKKPRK-ARTAFSDHQLNQLERSFERQKYLSV
210 220 230 240 250
160 170 180 190 200 210
pF1KB8 PERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLV
.: :: :.::.:::: :.:::: : ::. . .: :: : :: . ..:
NP_064 QDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ---TAVG-LE-------LLAEAGNYSALQ
260 270 280 290 300
220 230
pF1KB8 SVYNS-YPYYPYLYCVGSWSPAFW
.. : : :.: :
NP_064 RMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRVLIHGLGPG
310 320 330 340 350 360
>>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa)
initn: 274 init1: 210 opt: 280 Z-score: 216.9 bits: 48.0 E(85289): 2.4e-05
Smith-Waterman score: 280; 36.8% identity (56.8% similar) in 185 aa overlap (9-188:89-266)
10 20 30
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLT---SFLIQDIL
:: :: :. :.. . .
NP_061 QARRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYP
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB8 RDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEP
: . :: . . .:: :: : ::.. :: . :: :. .:: :: :
NP_061 RAHGGYGGGLSPDTSDRDS---PETGEEMGRAE-GAW--PRGPGPGAVQREAAELAARGP
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB8 E--RHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPE
. .: : . ..: . .:..:..::..::..:: :. ..:::. :
NP_061 AAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAE
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB8 RAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSV
:: :: .:.:::::::::::::: : :: ::..::
NP_061 RAGLAASLQLTETQVKIWFQNRRNKWKR-QLAAELEAASLSPPGAQRLVRVPVLYHESPP
240 250 260 270 280 290
220 230
pF1KB8 YNSYPYYPYLYCVGSWSPAFW
NP_061 AAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV
300 310 320 330 340
234 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:21:36 2016 done: Fri Nov 4 20:21:37 2016
Total Scan time: 7.900 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]