FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8902, 234 aa
  1>>>pF1KB8902 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6580+/-0.000763; mu= 6.2794+/- 0.047
 mean_var=187.4030+/-37.763, 0's: 0 Z-trim(115.5): 166  B-trim: 7 in 1/51
 Lambda= 0.093688
 statistics sampled from 15844 (16020) to 15844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS6042.1 1 gene_id:4824|Hs108|chr8               ( 234) 1574 223.8 7.3e-59
CCDS59095.1 1 gene_id:4824|Hs108|chr8              ( 159) 1002 146.4   1e-35


>>CCDS6042.1 1 gene_id:4824|Hs108|chr8                    (234 aa)
 initn: 1574 init1: 1574 opt: 1574  Z-score: 1170.2  bits: 223.8 E(32554): 7.3e-59
Smith-Waterman score: 1574; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB8 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB8 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
              190       200       210       220       230    

>>CCDS59095.1 1 gene_id:4824|Hs108|chr8                   (159 aa)
 initn: 1002 init1: 1002 opt: 1002  Z-score: 754.5  bits: 146.4 E(32554): 1e-35
Smith-Waterman score: 1002; 97.4% identity (98.1% similar) in 155 aa overlap (80-234:5-159)

      50        60        70        80        90       100         
pF1KB8 RQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENT
                                     :.  : ::::::::::::::::::::::::
CCDS59                           MLRVPEPRPGEAETLAETEPERHLGSYLLDSENT
                                         10        20        30    

     110       120       130       140       150       160         
pF1KB8 SGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK
           40        50        60        70        80        90    

     170       180       190       200       210       220         
pF1KB8 IWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSW
          100       110       120       130       140       150    

     230    
pF1KB8 SPAFW
       :::::
CCDS59 SPAFW
            




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:21:36 2016 done: Fri Nov  4 20:21:36 2016
 Total Scan time:  2.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]