FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8889, 204 aa
  1>>>pF1KB8889 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8718+/-0.000288; mu= 16.6323+/- 0.018
 mean_var=68.6562+/-13.928, 0's: 0 Z-trim(119.6): 10  B-trim: 1229 in 1/51
 Lambda= 0.154787
 statistics sampled from 33876 (33886) to 33876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.397), width:  16
 Scan time:  6.690

The best scores are:                                      opt bits E(85289)
NP_065129 (OMIM: 606910) bcl-2-like protein 10 iso ( 204) 1397 320.0 1.7e-87
NP_001293097 (OMIM: 606910) bcl-2-like protein 10  ( 241) 1100 253.7 1.8e-67


>>NP_065129 (OMIM: 606910) bcl-2-like protein 10 isoform  (204 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1691.9  bits: 320.0 E(85289): 1.7e-87
Smith-Waterman score: 1397; 99.5% identity (99.5% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB8 MVDQLRERTTMADPLRERTERLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_065 MVDQLRERTTMADPLRERTELLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
              130       140       150       160       170       180

              190       200    
pF1KB8 KQLVQAFLSCLLTTAFIYLWTRLL
       ::::::::::::::::::::::::
NP_065 KQLVQAFLSCLLTTAFIYLWTRLL
              190       200    

>>NP_001293097 (OMIM: 606910) bcl-2-like protein 10 isof  (241 aa)
 initn: 1118 init1: 1100 opt: 1100  Z-score: 1332.4  bits: 253.7 E(85289): 1.8e-67
Smith-Waterman score: 1100; 99.4% identity (99.4% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB8 MVDQLRERTTMADPLRERTERLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 MVDQLRERTTMADPLRERTELLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
       :::::::::::::::::::::::::::::::::::::::::::                 
NP_001 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWVSTRRTPGHGAGRAAGK
              130       140       150       160       170       180

              190       200                                        
pF1KB8 KQLVQAFLSCLLTTAFIYLWTRLL                                    
                                                                   
NP_001 RPRGWHGWLLSLLQDPLSTGFLEKTAGPGFSVMLVNNSLHLSLDTIIMSFKTFNPLLPAQ
              190       200       210       220       230       240




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:58:56 2016 done: Sat Nov  5 19:58:57 2016
 Total Scan time:  6.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]