FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8889, 204 aa
  1>>>pF1KB8889 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0432+/-0.000592; mu= 15.7812+/- 0.036
 mean_var=68.6388+/-13.828, 0's: 0 Z-trim(112.7): 11  B-trim: 0 in 0/51
 Lambda= 0.154807
 statistics sampled from 13403 (13413) to 13403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.412), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS10148.1 BCL2L10 gene_id:10017|Hs108|chr15      ( 204) 1397 319.9 6.6e-88
CCDS76756.1 BCL2L10 gene_id:10017|Hs108|chr15      ( 241) 1100 253.7   7e-68


>>CCDS10148.1 BCL2L10 gene_id:10017|Hs108|chr15           (204 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1691.7  bits: 319.9 E(32554): 6.6e-88
Smith-Waterman score: 1397; 99.5% identity (99.5% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB8 MVDQLRERTTMADPLRERTERLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS10 MVDQLRERTTMADPLRERTELLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
              130       140       150       160       170       180

              190       200    
pF1KB8 KQLVQAFLSCLLTTAFIYLWTRLL
       ::::::::::::::::::::::::
CCDS10 KQLVQAFLSCLLTTAFIYLWTRLL
              190       200    

>>CCDS76756.1 BCL2L10 gene_id:10017|Hs108|chr15           (241 aa)
 initn: 1118 init1: 1100 opt: 1100  Z-score: 1332.2  bits: 253.7 E(32554): 7e-68
Smith-Waterman score: 1100; 99.4% identity (99.4% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB8 MVDQLRERTTMADPLRERTERLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS76 MVDQLRERTTMADPLRERTELLLADYLGYCAREPGTPEPAPSTPEAAVLRSAAARLRQIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLERGPLVTARWKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWDGFCHFFRTPFPLAFWR
       :::::::::::::::::::::::::::::::::::::::::::                 
CCDS76 WGFQPRLKEQEGDVARDCQRLVALLSSRLMGQHRAWLQAQGGWVSTRRTPGHGAGRAAGK
              130       140       150       160       170       180

              190       200                                        
pF1KB8 KQLVQAFLSCLLTTAFIYLWTRLL                                    
                                                                   
CCDS76 RPRGWHGWLLSLLQDPLSTGFLEKTAGPGFSVMLVNNSLHLSLDTIIMSFKTFNPLLPAQ
              190       200       210       220       230       240




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:58:55 2016 done: Sat Nov  5 19:58:56 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]