Result of FASTA (omim) for
pF1KB8882
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8882, 182 aa
1>>>pF1KB8882 182 - 182 aa - 182 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9036+/-0.00027; mu= 15.4589+/- 0.017
mean_var=63.1239+/-12.438, 0's: 0 Z-trim(120.0): 21 B-trim: 0 in 0/55
Lambda= 0.161427
statistics sampled from 34622 (34644) to 34622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.406), width: 16
Scan time: 6.140
The best scores are: opt bits E(85289)
NP_001532 (OMIM: 602179) heat shock protein beta-2 ( 182) 1230 294.1 8.5e-80
XP_011540910 (OMIM: 123590,608810,613763,613869,61 ( 175) 381 96.3 2.7e-20
NP_001276737 (OMIM: 123590,608810,613763,613869,61 ( 175) 381 96.3 2.7e-20
NP_001276736 (OMIM: 123590,608810,613763,613869,61 ( 175) 381 96.3 2.7e-20
NP_001876 (OMIM: 123590,608810,613763,613869,61518 ( 175) 381 96.3 2.7e-20
NP_653218 (OMIM: 610695) heat shock protein beta-6 ( 160) 349 88.8 4.5e-18
NP_000385 (OMIM: 123580,604219) alpha-crystallin A ( 173) 324 83.0 2.7e-16
NP_001531 (OMIM: 602195,606595,608634) heat shock ( 205) 309 79.6 3.5e-15
NP_001317308 (OMIM: 123590,608810,613763,613869,61 ( 108) 293 75.7 2.8e-14
XP_005261150 (OMIM: 123580,604219) PREDICTED: alph ( 136) 277 72.0 4.4e-13
NP_006299 (OMIM: 604624,613376) heat shock protein ( 150) 240 63.4 1.9e-10
NP_055180 (OMIM: 158590,608014,608673) heat shock ( 196) 206 55.6 5.6e-08
NP_055239 (OMIM: 610692) heat shock protein beta-7 ( 170) 187 51.1 1.1e-06
XP_011539552 (OMIM: 610692) PREDICTED: heat shock ( 262) 178 49.2 6.4e-06
XP_011539551 (OMIM: 610692) PREDICTED: heat shock ( 263) 174 48.2 1.2e-05
>>NP_001532 (OMIM: 602179) heat shock protein beta-2 [Ho (182 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1553.6 bits: 294.1 E(85289): 8.5e-80
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV
130 140 150 160 170 180
pF1KB8 EP
::
NP_001 EP
>>XP_011540910 (OMIM: 123590,608810,613763,613869,615184 (175 aa)
initn: 358 init1: 310 opt: 381 Z-score: 485.2 bits: 96.3 E(85289): 2.7e-20
Smith-Waterman score: 381; 43.1% identity (72.3% similar) in 137 aa overlap (16-148:15-149)
10 20 30 40 50
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGYYVRPRA---APA
. : .:::: .: ::: :: ... : : .:.:: . ::.
XP_011 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSRE
. : ::.:: . .:.. :::.::.:.:. :... ...:: ..: .: :.:::.:::
XP_011 WFDT--GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEE
: : : .:::::: . ..:: ::.:....::
XP_011 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK
120 130 140 150 160 170
180
pF1KB8 AAIVEP
>>NP_001276737 (OMIM: 123590,608810,613763,613869,615184 (175 aa)
initn: 358 init1: 310 opt: 381 Z-score: 485.2 bits: 96.3 E(85289): 2.7e-20
Smith-Waterman score: 381; 43.1% identity (72.3% similar) in 137 aa overlap (16-148:15-149)
10 20 30 40 50
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGYYVRPRA---APA
. : .:::: .: ::: :: ... : : .:.:: . ::.
NP_001 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSRE
. : ::.:: . .:.. :::.::.:.:. :... ...:: ..: .: :.:::.:::
NP_001 WFDT--GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEE
: : : .:::::: . ..:: ::.:....::
NP_001 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK
120 130 140 150 160 170
180
pF1KB8 AAIVEP
>>NP_001276736 (OMIM: 123590,608810,613763,613869,615184 (175 aa)
initn: 358 init1: 310 opt: 381 Z-score: 485.2 bits: 96.3 E(85289): 2.7e-20
Smith-Waterman score: 381; 43.1% identity (72.3% similar) in 137 aa overlap (16-148:15-149)
10 20 30 40 50
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGYYVRPRA---APA
. : .:::: .: ::: :: ... : : .:.:: . ::.
NP_001 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSRE
. : ::.:: . .:.. :::.::.:.:. :... ...:: ..: .: :.:::.:::
NP_001 WFDT--GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEE
: : : .:::::: . ..:: ::.:....::
NP_001 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK
120 130 140 150 160 170
180
pF1KB8 AAIVEP
>>NP_001876 (OMIM: 123590,608810,613763,613869,615184) a (175 aa)
initn: 358 init1: 310 opt: 381 Z-score: 485.2 bits: 96.3 E(85289): 2.7e-20
Smith-Waterman score: 381; 43.1% identity (72.3% similar) in 137 aa overlap (16-148:15-149)
10 20 30 40 50
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGYYVRPRA---APA
. : .:::: .: ::: :: ... : : .:.:: . ::.
NP_001 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSRE
. : ::.:: . .:.. :::.::.:.:. :... ...:: ..: .: :.:::.:::
NP_001 WFDT--GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEE
: : : .:::::: . ..:: ::.:....::
NP_001 FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK
120 130 140 150 160 170
180
pF1KB8 AAIVEP
>>NP_653218 (OMIM: 610695) heat shock protein beta-6 [Ho (160 aa)
initn: 339 init1: 253 opt: 349 Z-score: 445.5 bits: 88.8 E(85289): 4.5e-18
Smith-Waterman score: 349; 45.0% identity (71.0% similar) in 131 aa overlap (18-146:22-146)
10 20 30 40 50
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAA
.. :.:: .:::::::: :. : :: ::.: :
NP_653 MEIPVPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLR---A
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVS
:. .... . :.:...:::.::.:.:..:..: . .:: ::: .: :.::::.
NP_653 PS---VALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 REFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEE
::: : : :: ::: : .::: .:.:...:
NP_653 REFHRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAPPPAAAK
120 130 140 150 160
180
pF1KB8 EEAAIVEP
>>NP_000385 (OMIM: 123580,604219) alpha-crystallin A cha (173 aa)
initn: 336 init1: 279 opt: 324 Z-score: 413.6 bits: 83.0 E(85289): 2.7e-16
Smith-Waterman score: 324; 38.0% identity (62.0% similar) in 158 aa overlap (21-178:19-170)
10 20 30 40 50 60
pF1KB8 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS
:::: .: :::::. ..: : : : .
NP_000 MDVTIQHPWFKRTLGPFYPSRLFDQFFGEGLFEYDLL-PFLSSTISPYYRQSLFRTVL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT
.: ::.: .. :: ::::.::.:...::.. :...:. ..: .: : ::..:::: :
NP_000 DSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV
: ::..:: . .:: ::.:.. .:. ::. : : : . ::. .:
NP_000 YRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAI-----PVSREEKPTSAPS
120 130 140 150 160 170
pF1KB8 EP
NP_000 S
>>NP_001531 (OMIM: 602195,606595,608634) heat shock prot (205 aa)
initn: 351 init1: 294 opt: 309 Z-score: 393.6 bits: 79.6 E(85289): 3.5e-15
Smith-Waterman score: 341; 37.2% identity (58.9% similar) in 207 aa overlap (1-178:1-204)
10 20 30 40 50
pF1KB8 MSGRSVPHA---HPATAEYEFANP-SRLGEQRFGEGLLPEEI---LTPTLYHGYYVRPRA
:. : :: . :. .. : ::: .: :: :::: : . . :: :::
NP_001 MTERRVPFSLLRGPSWDPFRDWYPHSRLFDQAFGLPRLPEEWSQWLGGSSWPGY-VRPLP
10 20 30 40 50
60 70 80 90
pF1KB8 APAGEG--------SRA-------GASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLE
: :. ::: :.::.: . .... :::.::.:::.::.: :...:
NP_001 PAAIESPAVAAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVE
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 VSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVN
....: .: :.::..:: : : :.:: ::: .: ..:: .: :..::: .: :. :
NP_001 ITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP--KLATQSN
120 130 140 150 160 170
160 170 180
pF1KB8 EVYISL-------LPAPPDPEEEEEAAIVEP
:. : . : .: . .: ::
NP_001 EITIPVTFESRAQLGGPEAAKSDETAAK
180 190 200
>>NP_001317308 (OMIM: 123590,608810,613763,613869,615184 (108 aa)
initn: 293 init1: 293 opt: 293 Z-score: 377.5 bits: 75.7 E(85289): 2.8e-14
Smith-Waterman score: 293; 46.3% identity (81.7% similar) in 82 aa overlap (67-148:1-82)
40 50 60 70 80 90
pF1KB8 EILTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNL
.:: . .:.. :::.::.:.:. :... ..
NP_001 MRLEKDRFSVNLDVKHFSPEELKVKVLGDV
10 20 30
100 110 120 130 140 150
pF1KB8 LEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTE
.:: ..: .: :.:::.:::: : : .:::::: . ..:: ::.:....::
NP_001 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER
40 50 60 70 80 90
160 170 180
pF1KB8 VNEVYISLLPAPPDPEEEEEAAIVEP
NP_001 TIPITREEKPAVTAAPKK
100
>>XP_005261150 (OMIM: 123580,604219) PREDICTED: alpha-cr (136 aa)
initn: 262 init1: 262 opt: 277 Z-score: 355.9 bits: 72.0 E(85289): 4.4e-13
Smith-Waterman score: 277; 37.5% identity (64.8% similar) in 128 aa overlap (51-178:12-133)
30 40 50 60 70 80
pF1KB8 PSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFLDV
:.: : .: : ..: .. :: ::::
XP_005 MPVCPGDSHRPPKALPHLVCGRRG-RQVRSDRDKFVIFLDV
10 20 30 40
90 100 110 120 130 140
pF1KB8 SHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDG
.::.:...::.. :...:. ..: .: : ::..:::: : : ::..:: . .:: ::
XP_005 KHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADG
50 60 70 80 90 100
150 160 170 180
pF1KB8 ILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVEP
.:.. .:. ::. : : : . ::. .:
XP_005 MLTFCGPKIQTGLDATHAERAI-----PVSREEKPTSAPSS
110 120 130
182 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:58:22 2016 done: Sat Nov 5 19:58:23 2016
Total Scan time: 6.140 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]