FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8854, 82 aa
  1>>>pF1KB8854 82 - 82 aa - 82 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7139+/-0.000199; mu= 8.8664+/- 0.013
 mean_var=87.0795+/-17.116, 0's: 0 Z-trim(127.5): 4  B-trim: 0 in 0/62
 Lambda= 0.137441
 statistics sampled from 56011 (56015) to 56011 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.912), E-opt: 0.2 (0.657), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(85289)
NP_036517 (OMIM: 614812) nuclear protein 1 isoform (  82)  552 116.9 3.8e-27
NP_001035948 (OMIM: 614812) nuclear protein 1 isof ( 100)  299 66.8 5.6e-12


>>NP_036517 (OMIM: 614812) nuclear protein 1 isoform b [  (82 aa)
 initn: 552 init1: 552 opt: 552  Z-score: 608.3  bits: 116.9 E(85289): 3.8e-27
Smith-Waterman score: 552; 100.0% identity (100.0% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KB8 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGGGGRKGRTKREAAANTNRPSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGGGGRKGRTKREAAANTNRPSPG
               10        20        30        40        50        60

               70        80  
pF1KB8 GHERKLVTKLQNSERKKRGARR
       ::::::::::::::::::::::
NP_036 GHERKLVTKLQNSERKKRGARR
               70        80  

>>NP_001035948 (OMIM: 614812) nuclear protein 1 isoform   (100 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 336.0  bits: 66.8 E(85289): 5.6e-12
Smith-Waterman score: 506; 82.0% identity (82.0% similar) in 100 aa overlap (1-82:1-100)

               10        20        30                          40  
pF1KB8 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG------------------GGGR
       ::::::::::::::::::::::::::::::::::::::                  ::::
NP_001 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR
               10        20        30        40        50        60

             50        60        70        80  
pF1KB8 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
       ::::::::::::::::::::::::::::::::::::::::
NP_001 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
               70        80        90       100




82 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:35:51 2016 done: Sat Nov  5 00:35:52 2016
 Total Scan time:  4.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]