FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8854, 82 aa
  1>>>pF1KB8854 82 - 82 aa - 82 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6433+/-0.000423; mu= 9.2931+/- 0.026
 mean_var=85.9961+/-16.962, 0's: 0 Z-trim(119.9): 5  B-trim: 0 in 0/54
 Lambda= 0.138304
 statistics sampled from 21292 (21297) to 21292 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.91), E-opt: 0.2 (0.654), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS10634.1 NUPR1 gene_id:26471|Hs108|chr16        (  82)  552 117.5 9.4e-28
CCDS42137.1 NUPR1 gene_id:26471|Hs108|chr16        ( 100)  299 67.1 1.7e-12


>>CCDS10634.1 NUPR1 gene_id:26471|Hs108|chr16             (82 aa)
 initn: 552 init1: 552 opt: 552  Z-score: 611.7  bits: 117.5 E(32554): 9.4e-28
Smith-Waterman score: 552; 100.0% identity (100.0% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KB8 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGGGGRKGRTKREAAANTNRPSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGGGGRKGRTKREAAANTNRPSPG
               10        20        30        40        50        60

               70        80  
pF1KB8 GHERKLVTKLQNSERKKRGARR
       ::::::::::::::::::::::
CCDS10 GHERKLVTKLQNSERKKRGARR
               70        80  

>>CCDS42137.1 NUPR1 gene_id:26471|Hs108|chr16             (100 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 337.7  bits: 67.1 E(32554): 1.7e-12
Smith-Waterman score: 506; 82.0% identity (82.0% similar) in 100 aa overlap (1-82:1-100)

               10        20        30                          40  
pF1KB8 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG------------------GGGR
       ::::::::::::::::::::::::::::::::::::::                  ::::
CCDS42 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR
               10        20        30        40        50        60

             50        60        70        80  
pF1KB8 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
       ::::::::::::::::::::::::::::::::::::::::
CCDS42 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
               70        80        90       100




82 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:35:51 2016 done: Sat Nov  5 00:35:51 2016
 Total Scan time:  1.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]