FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8842, 485 aa
  1>>>pF1KB8842 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5022+/-0.000923; mu= 16.7543+/- 0.055
 mean_var=68.2407+/-13.974, 0's: 0 Z-trim(105.6): 18  B-trim: 194 in 1/51
 Lambda= 0.155257
 statistics sampled from 8528 (8532) to 8528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.262), width:  16
 Scan time:  3.160

The best scores are:                                      opt bits E(32554)
CCDS13382.2 ZSWIM1 gene_id:90204|Hs108|chr20       ( 485) 3289 745.9 2.2e-215
CCDS13381.1 ZSWIM3 gene_id:140831|Hs108|chr20      ( 696)  420 103.4 8.3e-22


>>CCDS13382.2 ZSWIM1 gene_id:90204|Hs108|chr20            (485 aa)
 initn: 3289 init1: 3289 opt: 3289  Z-score: 3980.4  bits: 745.9 E(32554): 2.2e-215
Smith-Waterman score: 3289; 99.8% identity (100.0% similar) in 485 aa overlap (1-485:1-485)

               10        20        30        40        50        60
pF1KB8 MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 CAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 EKMNIQILEDTHKVQPQPPASCSCYFNQALHLPCRHILAMLSARRQVLQPDMLPAQWTAG
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS13 EKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQPDMLPAQWTAG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPY
              430       440       450       460       470       480

            
pF1KB8 EQVQL
       :::::
CCDS13 EQVQL
            

>>CCDS13381.1 ZSWIM3 gene_id:140831|Hs108|chr20           (696 aa)
 initn: 702 init1: 283 opt: 420  Z-score: 505.0  bits: 103.4 E(32554): 8.3e-22
Smith-Waterman score: 684; 27.9% identity (59.4% similar) in 498 aa overlap (21-478:165-654)

                         10        20        30        40        50
pF1KB8           MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLH
                                     ::  . .. .: .: : : . ..:  :   
CCDS13 KKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGITPSDLAKIAKVMKNFLKVDEGS--MASF
          140       150       160       170       180         190  

               60        70        80        90       100       110
pF1KB8 QVNKTAQLDTFNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLAR
       .:. . .:: ...::  : ..: .::: :..::. : .:..::.:::.. . .     .:
CCDS13 SVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHRVENTQGHILYAFLVENKERE-----SR
            200       210       220       230       240            

              120       130       140       150       160       170
pF1KB8 AVYFAIPAKEDTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSA
       .:.::.   : . ..:.:...: .::  : .: ...::: :    ::   ::.:..::: 
CCDS13 VVHFAVLKAETVTSVAKMLSIFTEFNSDWPKVKVVFVDPSFHYRAILQEIFPAARILLSI
       250       260       270       280       290       300       

              180       190       200       210       220       230
pF1KB8 FHICKFLQAKFYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELH
       .:  ..:. :... : .   .::.  .:. ..  .. ..:..:  . .  .    .  :.
CCDS13 YHTTRLLEKKLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDEDLFNFLQ
       310       320       330       340       350       360       

              240       250       260       270                    
pF1KB8 SHWLLNDRIWLAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPS---------------E
       .::.  . .:  :  ..    . :..::...:  .:..:    :               .
CCDS13 AHWFTCELLWYMHVRKGLLACNTYMDSLDIVTSKVSSLFREQQSLLDCILCFVDYIDFFN
       370       380       390       400       410       420       

         280             290        300        310        320      
pF1KB8 KQGMASL------FRYMQQNSAD-KANFNQGLCAQN-NHAPSD-TIPESPKLEQLVESHI
        .:. .:      ..  .  :   :..   :.:... .  :.. : :.. ...   .:..
CCDS13 TKGLKNLPTPPPKLKRARPASMPLKSKKAFGICGESLTSLPAEETKPDAQQVQVQQQSQV
       430       440       450       460       470       480       

            330          340       350       360       370         
pF1KB8 QHS----LNAIC-TGP--AAQLCLGELAVVQKSTHLIGSGSEKMNIQILEDTHKVQPQPP
         :    :...  .:   : .:: .:  :::.::::.  .. ....:.:::.:.:. .  
CCDS13 PPSQVGMLDTLHQSGSELAYKLCHNEWEVVQNSTHLVDMAGSSVDVQLLEDSHQVS-KDG
       490       500       510       520       530       540       

     380       390       400       410                420       430
pF1KB8 ASCSCYFNQALHLPCRHILAMLSARRQVLQPDMLPAQWTA---------GCATSLDSILG
        :::: :.:  :::::::::.: . .: .   :.  .:           :   .   . .
CCDS13 CSCSCSFQQWYHLPCRHILALLHTSQQPVGEAMVCRRWQKKYQYLLGPNGELQDRGMVPN
        550       560       570       580       590       600      

              440       450       460       470       480          
pF1KB8 SKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPYEQVQL     
       .   :   ..  .  :..:...::..    :.:.::::::...: : :            
CCDS13 TGQPEKQGRNDMIQDLSRELANLLMQTEGPELEERYSTLRKIVDIWAGPSQPSELFQQPG
        610       620       630       640       650       660      

CCDS13 DFKDVGRLPFLWGKQEEGEGFPPATAVMHY
        670       680       690      




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:02:46 2016 done: Fri Nov  4 16:02:47 2016
 Total Scan time:  3.160 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]