FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8799, 338 aa
  1>>>pF1KB8799 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4232+/-0.00112; mu= 15.5911+/- 0.067
 mean_var=75.9107+/-17.957, 0's: 0 Z-trim(101.6): 56  B-trim: 463 in 1/48
 Lambda= 0.147205
 statistics sampled from 6535 (6572) to 6535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.531), E-opt: 0.2 (0.202), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS3211.1 GPR160 gene_id:26996|Hs108|chr3         ( 338) 2270 492.0 2.9e-139


>>CCDS3211.1 GPR160 gene_id:26996|Hs108|chr3              (338 aa)
 initn: 2270 init1: 2270 opt: 2270  Z-score: 2613.7  bits: 492.0 E(32554): 2.9e-139
Smith-Waterman score: 2270; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB8 MTALSSENCSFQYQLRQTNQPLDVNYLLFLIILGKILLNILTLGMRRKNTCQNFMEYFCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTALSSENCSFQYQLRQTNQPLDVNYLLFLIILGKILLNILTLGMRRKNTCQNFMEYFCI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SLAFVDLLLLVNISIILYFRDFVLLSIRFTKYHICLFTQIISFTYGFLHYPVFLTACIDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLAFVDLLLLVNISIILYFRDFVLLSIRFTKYHICLFTQIISFTYGFLHYPVFLTACIDY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CLNFSKTTKLSFKCQKLFYFFTVILIWISVLAYVLGDPAIYQSLKAQNAYSRHCPFYVSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLNFSKTTKLSFKCQKLFYFFTVILIWISVLAYVLGDPAIYQSLKAQNAYSRHCPFYVSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QSYWLSFFMVMILFVAFITCWEEVTTLVQAIRITSYMNETILYFPFSSHSSYTVRSKKIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSYWLSFFMVMILFVAFITCWEEVTTLVQAIRITSYMNETILYFPFSSHSSYTVRSKKIF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LSKLIVCFLSTWLPFVLLQVIIVLLKVQIPAYIEMNIPWLYFVNSFLIATVYWFNCHKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LSKLIVCFLSTWLPFVLLQVIIVLLKVQIPAYIEMNIPWLYFVNSFLIATVYWFNCHKLN
              250       260       270       280       290       300

              310       320       330        
pF1KB8 LKDIGLPLDPFVNWKCCFIPLTIPNLEQIEKPISIMIC
       ::::::::::::::::::::::::::::::::::::::
CCDS32 LKDIGLPLDPFVNWKCCFIPLTIPNLEQIEKPISIMIC
              310       320       330        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:42:31 2016 done: Fri Nov  4 15:42:31 2016
 Total Scan time:  2.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]