Result of FASTA (omim) for
pF1KB8679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8679, 514 aa
1>>>pF1KB8679 514 - 514 aa - 514 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5416+/-0.000388; mu= 13.4966+/- 0.024
mean_var=114.4480+/-22.553, 0's: 0 Z-trim(115.0): 55 B-trim: 611 in 1/55
Lambda= 0.119886
statistics sampled from 25126 (25178) to 25126 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.295), width: 16
Scan time: 8.850
The best scores are: opt bits E(85289)
NP_001354 (OMIM: 300126,305000) H/ACA ribonucleopr ( 514) 3338 588.5 1.5e-167
NP_001135935 (OMIM: 300126,305000) H/ACA ribonucle ( 509) 3280 578.5 1.6e-164
NP_001275676 (OMIM: 300126,305000) H/ACA ribonucle ( 420) 2764 489.2 1e-137
>>NP_001354 (OMIM: 300126,305000) H/ACA ribonucleoprotei (514 aa)
initn: 3338 init1: 3338 opt: 3338 Z-score: 3128.9 bits: 588.5 E(85289): 1.5e-167
Smith-Waterman score: 3338; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
430 440 450 460 470 480
490 500 510
pF1KB8 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
::::::::::::::::::::::::::::::::::
NP_001 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
490 500 510
>>NP_001135935 (OMIM: 300126,305000) H/ACA ribonucleopro (509 aa)
initn: 3076 init1: 2741 opt: 3280 Z-score: 3074.8 bits: 578.5 E(85289): 1.6e-164
Smith-Waterman score: 3280; 98.8% identity (99.0% similar) in 514 aa overlap (1-514:1-509)
10 20 30 40 50 60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQD-----
370 380 390 400 410
430 440 450 460 470 480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
420 430 440 450 460 470
490 500 510
pF1KB8 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
::::::::::::::::::::::::::::::::::
NP_001 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
480 490 500
>>NP_001275676 (OMIM: 300126,305000) H/ACA ribonucleopro (420 aa)
initn: 2764 init1: 2764 opt: 2764 Z-score: 2593.6 bits: 489.2 E(85289): 1e-137
Smith-Waterman score: 2764; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
514 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:54:12 2016 done: Sat Nov 5 21:54:13 2016
Total Scan time: 8.850 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]