FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8666, 362 aa
  1>>>pF1KB8666 362 - 362 aa - 362 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7920+/-0.000758; mu= 11.7643+/- 0.046
 mean_var=137.4363+/-28.499, 0's: 0 Z-trim(113.9): 44  B-trim: 685 in 1/52
 Lambda= 0.109402
 statistics sampled from 14417 (14461) to 14417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.444), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS5944.1 RNF32 gene_id:140545|Hs108|chr7         ( 362) 2495 404.6 6.7e-113
CCDS78293.1 RNF32 gene_id:140545|Hs108|chr7        ( 310) 1942 317.3 1.1e-86
CCDS78292.1 RNF32 gene_id:140545|Hs108|chr7        ( 235) 1564 257.5 8.3e-69


>>CCDS5944.1 RNF32 gene_id:140545|Hs108|chr7              (362 aa)
 initn: 2495 init1: 2495 opt: 2495  Z-score: 2140.4  bits: 404.6 E(32554): 6.7e-113
Smith-Waterman score: 2495; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KB8 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHECSICLAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHECSICLAPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLCRSCYQKKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLCRSCYQKKIL
              310       320       330       340       350       360

         
pF1KB8 EC
       ::
CCDS59 EC
         

>>CCDS78293.1 RNF32 gene_id:140545|Hs108|chr7             (310 aa)
 initn: 1936 init1: 1936 opt: 1942  Z-score: 1669.6  bits: 317.3 E(32554): 1.1e-86
Smith-Waterman score: 1942; 96.7% identity (97.0% similar) in 299 aa overlap (1-297:1-296)

               10        20        30        40        50        60
pF1KB8 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSY
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KB8 NTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHEC--SICLA
       ::::::::::::::::::::::::::::::::::::::::::::    ::  :  . :: 
CCDS78 NTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQ---NETSACFEDPCLG
              250       260       270       280          290       

      300       310       320       330       340       350        
pF1KB8 PLSAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLCRSCYQKK
                                                                   
CCDS78 AHGSHFSLSNFLL                                               
       300       310                                               

>>CCDS78292.1 RNF32 gene_id:140545|Hs108|chr7             (235 aa)
 initn: 1564 init1: 1564 opt: 1564  Z-score: 1348.8  bits: 257.5 E(32554): 8.3e-69
Smith-Waterman score: 1564; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KB8 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DTGLKKTTQCPKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GDSVQPCPICKEEFELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSY
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS78 GARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKTQDWKPA     
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB8 NTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHECSICLAPL




362 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:21:56 2016 done: Fri Nov  4 14:21:57 2016
 Total Scan time:  3.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]