Result of FASTA (ccds) for
pF1KB8664
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8664, 409 aa
1>>>pF1KB8664 409 - 409 aa - 409 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4112+/-0.000824; mu= 12.4699+/- 0.050
mean_var=94.9520+/-18.939, 0's: 0 Z-trim(109.9): 54 B-trim: 0 in 0/51
Lambda= 0.131620
statistics sampled from 11191 (11238) to 11191 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.345), width: 16
Scan time: 2.720
The best scores are: opt bits E(32554)
CCDS6331.1 DEPTOR gene_id:64798|Hs108|chr8 ( 409) 2707 524.1 9.5e-149
CCDS64960.1 DEPTOR gene_id:64798|Hs108|chr8 ( 308) 1772 346.4 2.1e-95
CCDS6201.1 PREX2 gene_id:80243|Hs108|chr8 (1606) 522 109.5 2.4e-23
CCDS13410.1 PREX1 gene_id:57580|Hs108|chr20 (1659) 504 106.0 2.6e-22
>>CCDS6331.1 DEPTOR gene_id:64798|Hs108|chr8 (409 aa)
initn: 2707 init1: 2707 opt: 2707 Z-score: 2784.0 bits: 524.1 E(32554): 9.5e-149
Smith-Waterman score: 2707; 99.5% identity (99.8% similar) in 409 aa overlap (1-409:1-409)
10 20 30 40 50 60
pF1KB8 MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGTFPLDNEVKAFMRGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGTFPLDNEVKAFMRGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFRMNFRRRRRLMELLNEKSPSSQE
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS63 TTRKEAEQLCHRLMEHGIIQHVSNKHPFVDSNLLYQFRMNFRRRRRLMELLNEKSPSSQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 THDSPFCLGKQSHDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSSSPTLSSSP
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 THDSPFCLRKQSHDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSSSPTLSSSP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGP
310 320 330 340 350 360
370 380 390 400
pF1KB8 AAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEELEC
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEELEC
370 380 390 400
>>CCDS64960.1 DEPTOR gene_id:64798|Hs108|chr8 (308 aa)
initn: 1764 init1: 1764 opt: 1772 Z-score: 1826.3 bits: 346.4 E(32554): 2.1e-95
Smith-Waterman score: 1803; 74.8% identity (75.1% similar) in 409 aa overlap (1-409:1-308)
10 20 30 40 50 60
pF1KB8 MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTY
::::::::::::::::::::::::::::::::::::::::::
CCDS64 MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRL------------------
10 20 30 40
70 80 90 100 110 120
pF1KB8 PNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKD
CCDS64 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB8 DGTFPLDNEVKAFMRGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEA
:::::::::::::::::::::::::::::::::::::
CCDS64 -----------------------MSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEA
50 60 70
190 200 210 220 230 240
pF1KB8 TTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFRMNFRRRRRLMELLNEKSPSSQE
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS64 TTRKEAEQLCHRLMEHGIIQHVSNKHPFVDSNLLYQFRMNFRRRRRLMELLNEKSPSSQE
80 90 100 110 120 130
250 260 270 280 290 300
pF1KB8 THDSPFCLGKQSHDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSSSPTLSSSP
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 THDSPFCLRKQSHDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSSSPTLSSSP
140 150 160 170 180 190
310 320 330 340 350 360
pF1KB8 PVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGP
200 210 220 230 240 250
370 380 390 400
pF1KB8 AAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEELEC
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEELEC
260 270 280 290 300
>>CCDS6201.1 PREX2 gene_id:80243|Hs108|chr8 (1606 aa)
initn: 470 init1: 355 opt: 522 Z-score: 532.6 bits: 109.5 E(32554): 2.4e-23
Smith-Waterman score: 522; 32.0% identity (61.0% similar) in 372 aa overlap (27-380:370-727)
10 20 30 40 50
pF1KB8 MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVT--GEQL-RLRLHEEKVIKDR
.:. . :... ::.: .. .. ..::::
CCDS62 VCMAKTPEEKHEWFEAILKERERRKGLKLGMEQDTWVMISEQGEKLYKMMCRQGNLIKDR
340 350 360 370 380 390
60 70 80 90 100 110
pF1KB8 RHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKL
...: :.:.::...:...::.: : : ...: : : . :::::: :.:. :: ..
CCDS62 KRKLTTFPKCFLGSEFVSWLLEIGEIHRPEEGVHLGQALLENGIIHHVTDKHQ-FKPEQM
400 410 420 430 440 450
120 130 140 150 160 170
pF1KB8 FYRFRKDDGTFPLDNEVKAFM-RGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLD
.:::: ::::: ::.. . .: ::: .: : . ... .. . :. . ::....:
CCDS62 LYRFRYDDGTFYPRNEMQDVISKGVRLYCRLHSLFTPVIRDKDYHLRTYKSVVMANKLID
460 470 480 490 500 510
180 190 200 210 220 230
pF1KB8 WLVQEGEATTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFRMNFRRRRRLMELLN
::. .:. ::.:: . : ..:...:: : : : ::..: : .. :: :
CCDS62 WLIAQGDCRTREEAMIFGVGLCDNGFMHHVLEKSEFKDEPLLFRF---FSDEE--MEGSN
520 530 540 550 560 570
240 250 260 270 280
pF1KB8 EKSPSSQETHDSPFC---LGKQS--HDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGS-
: :: ..:. ..:. : .: .. .... :.. :...: . ..
CCDS62 MK--HRLMKHDLKVVENVIAKSLLIKSNEGSYGF-GLEDKNKVPIIKLVEKGSNAEMAGM
580 590 600 610 620 630
290 300 310 320 330
pF1KB8 ---SGYFSSSPTLSSSPP---VLCNPKSVL--KRPVTSEELLTPGAPYARKTFTIVGDAV
. :. . : : : : :: : ..:. ..:. : :.: : .:
CCDS62 EVGKKIFAINGDLVFMRPFNEVDCFLKSCLNSRKPL---RVLVSTKP--RETVKIPDSAD
640 650 660 670 680
340 350 360 370 380 390
pF1KB8 GWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRT
: :: .:: : ..:: . :::::.. : ...:::.::
CCDS62 GLGFQIRGFGPSVVHAVGRGTVAAAAGLHPGQCIIKVNGINVSKETHASVIAHVTACRKY
690 700 710 720 730 740
400
pF1KB8 IVMEVMEELEC
CCDS62 RRPTKQDSIQWVYNSIESAQEDLQKSHSKPPGDEAGDAFDCKVEEVIDKFNTMAIIDGKK
750 760 770 780 790 800
>>CCDS13410.1 PREX1 gene_id:57580|Hs108|chr20 (1659 aa)
initn: 402 init1: 323 opt: 504 Z-score: 513.9 bits: 106.0 E(32554): 2.6e-22
Smith-Waterman score: 506; 30.1% identity (60.9% similar) in 379 aa overlap (23-382:392-761)
10 20 30 40
pF1KB8 MEEGGSTGSAGSDSSTSGSGGAQQRE-----LERMAEVLVT--GEQLRLRLH
.::: .:: : :... ::.: .
CCDS13 HNTAKNKWFVCMAKTAEEKQKWLDAIIREREQRESLKLGMERDAYVMIAEKGEKLYHMMM
370 380 390 400 410 420
50 60 70 80 90 100
pF1KB8 EEKV--IKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCD
..:: :::::..:.: :.::...:.. ::.: : : : ...: : : . :::::: :
CCDS13 NKKVNLIKDRRRKLSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSD
430 440 450 460 470 480
110 120 130 140 150 160
pF1KB8 EHKEFKDVKLFYRFRKDDGTFPLDNEVKAFM-RGQRLYEKLMSPENTLLQPREEEGVKYE
.:. ::. ...:::: ::::. .:.. .: .: ::: .: : . ... :. . :.
CCDS13 KHQ-FKNEQVMYRFRYDDGTYKARSELEDIMSKGVRLYCRLHSLYTPVIKDRDYHLKTYK
490 500 510 520 530 540
170 180 190 200 210 220
pF1KB8 RTFMASEFLDWLVQEGEATTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFRMNFR
.. .:...:::. .:. ::.:: : : ..:...:: : : : . ..:. .
CCDS13 SVLPGSKLVDWLLAQGDCQTREEAVALGVGLCNNGFMHHVLEKSEFRDESQYFRFHAD--
550 560 570 580 590
230 240 250 260 270
pF1KB8 RRRRLMELLNEKSPSSQETHDSPFC---LGKQSHDNRKSTSF-MSVSPSKEIKIVSAVRR
:. . .: ..: .: . :.:. . .. ... ... .:..:.:
CCDS13 -----EEMEGTSSKNKQLRNDFKLVENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQR
600 610 620 630 640 650
280 290 300 310 320 330
pF1KB8 SSMSSCGS----SGYFSSSPTLSSSPPVLCNPKSVLKRPVTSEE-LLTPGAPYARKTFTI
.:.. .. .: . : : . . .:.:.. :.. : : :.. . :
CCDS13 GSLAEVAGLQVGRKIYSINEDLVFLRP-FSEVESILNQSFCSRRPLRLLVATKAKEIIKI
660 670 680 690 700 710
340 350 360 370 380 390
pF1KB8 VGDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLIL
. : .::. : .. :: .. : :::. . : ...::: ::..
CCDS13 PDQPDTLCFQIRGAAPPYVYAVGRGSEAMAAGLCAGQCILKVNGSNVMNDGAPEVLEHFQ
720 730 740 750 760 770
400
pF1KB8 TGPRTIVMEVMEELEC
CCDS13 AFRSRREEALGLYQWIYHTHEDAQEARASQEASTEDPSGEQAQEEDQADSAFPLLSLGPR
780 790 800 810 820 830
409 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:43:48 2016 done: Fri Nov 4 19:43:49 2016
Total Scan time: 2.720 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]