Result of FASTA (ccds) for
pF1KB8653
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8653, 234 aa
1>>>pF1KB8653 234 - 234 aa - 234 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2347+/-0.000782; mu= 15.2681+/- 0.047
mean_var=70.9169+/-14.381, 0's: 0 Z-trim(108.6): 20 B-trim: 83 in 1/49
Lambda= 0.152300
statistics sampled from 10296 (10305) to 10296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.317), width: 16
Scan time: 1.990
The best scores are: opt bits E(32554)
CCDS13989.1 SYNGR1 gene_id:9145|Hs108|chr22 ( 233) 1588 357.5 4.2e-99
CCDS13990.1 SYNGR1 gene_id:9145|Hs108|chr22 ( 191) 1121 254.9 2.8e-68
CCDS13991.1 SYNGR1 gene_id:9145|Hs108|chr22 ( 192) 892 204.5 3.9e-53
CCDS10456.1 SYNGR3 gene_id:9143|Hs108|chr16 ( 229) 810 186.6 1.2e-47
CCDS11753.1 SYNGR2 gene_id:9144|Hs108|chr17 ( 224) 733 169.6 1.5e-42
CCDS12717.1 SYNGR4 gene_id:23546|Hs108|chr19 ( 234) 498 118.0 5.3e-27
>>CCDS13989.1 SYNGR1 gene_id:9145|Hs108|chr22 (233 aa)
initn: 1586 init1: 1374 opt: 1588 Z-score: 1892.7 bits: 357.5 E(32554): 4.2e-99
Smith-Waterman score: 1588; 99.6% identity (99.6% similar) in 234 aa overlap (1-234:1-233)
10 20 30 40 50 60
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 FSQDYMDPSQDSSMPYAPYVEPNTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY
:::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS13 FSQDYMDPSQDSSMPYAPYVEP-TGPDPAGMGGTYQQPANTFDTEPQGYQSQGY
190 200 210 220 230
>>CCDS13990.1 SYNGR1 gene_id:9145|Hs108|chr22 (191 aa)
initn: 1120 init1: 1120 opt: 1121 Z-score: 1339.4 bits: 254.9 E(32554): 2.8e-68
Smith-Waterman score: 1121; 87.2% identity (92.8% similar) in 195 aa overlap (1-195:1-191)
10 20 30 40 50 60
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
:::::::::::::::::::::::::::::::::::::::::. :.:: .:.. : .
CCDS13 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK---DLS-
130 140 150 160 170
190 200 210 220 230
pF1KB8 FSQDYMDPSQDSSMPYAPYVEPNTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY
:...: :..:
CCDS13 FQEEYSTLFPASAQP
180 190
>>CCDS13991.1 SYNGR1 gene_id:9145|Hs108|chr22 (192 aa)
initn: 890 init1: 890 opt: 892 Z-score: 1067.4 bits: 204.5 E(32554): 3.9e-53
Smith-Waterman score: 892; 81.4% identity (87.8% similar) in 172 aa overlap (31-195:25-192)
10 20 30 40 50
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSW-------LFSIVVFGSIVNEGYLNSAS
::: ::::::::::::::::::::
CCDS13 MLTLEFGILEFDPSWIGSWTQRSWVSWRSRPGCELFSIVVFGSIVNEGYLNSAS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQ
::::::::::::::::::::::::::::::::::::::::::::::::. :.:: .:..
CCDS13 FWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 IGADSALFSQDYMDPSQDSSMPYAPYVEPNTGPDPAGMGGTYQQPANTFDTEPQGYQSQG
: . :...: :..:
CCDS13 ---DLS-FQEEYSTLFPASAQP
180 190
>>CCDS10456.1 SYNGR3 gene_id:9143|Hs108|chr16 (229 aa)
initn: 812 init1: 597 opt: 810 Z-score: 968.9 bits: 186.6 E(32554): 1.2e-47
Smith-Waterman score: 811; 51.7% identity (76.9% similar) in 238 aa overlap (1-234:1-229)
10 20 30 40 50 60
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
:::...:::.::.:.:: ...:.:.:.:::.::.:::.::: ::::::.:. : : :.
CCDS10 MEGASFGAGRAGAALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDSGPELRCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
.: : .:: .:::.:. :::.: .: ::: : :::::.::..::: :.: :..:.::::
CCDS10 FNGNAGACRFGVALGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
::::.:.:::: . : . : ::::::::::::::..:.. .: :.::...:.: .:
CCDS10 VGFCFLTNQWQRTAPGPATTQAG-DAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSL
130 140 150 160 170
190 200 210 220 230
pF1KB8 FSQDYMDPSQDSSMPYAPYVEPNTGPDPAGMGGT--YQQP--ANTFDTEPQGYQSQGY
:. . . : .:. : : : .:. :: ::.: ..:.:: :.::: .:
CCDS10 FATEQL--STGASQAYPGY------PVGSGVEGTETYQSPPFTETLDTSPKGYQVPAY
180 190 200 210 220
>>CCDS11753.1 SYNGR2 gene_id:9144|Hs108|chr17 (224 aa)
initn: 763 init1: 543 opt: 733 Z-score: 877.6 bits: 169.6 E(32554): 1.5e-42
Smith-Waterman score: 757; 49.4% identity (75.8% similar) in 231 aa overlap (1-230:1-219)
10 20 30 40 50 60
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
::.:::::.::::.:: .. ::... :.: .:...::. : .::: :. . .:.
CCDS11 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
.::: .:: :: :.::::::. ..:..:.::::::.. ::: :..:. ::.:.::::
CCDS11 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
::::.:.::: :..::: . :.:..::::.:::::::.:. : ::.:::. :.:.
CCDS11 VGFCFLTNQWAVTNPKD--VLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDD--
130 140 150 160 170
190 200 210 220 230
pF1KB8 FSQDYMDPSQDSSMPYAPYVEPNTGPDPAGMGGTYQQPANTFDTEP-QGYQSQGY
: :.:.::. : . :: : :... : .:::: : ..: .:::
CCDS11 FIQNYVDPTPDPNTAYASY--PGASVD------NYQQPPFTQNAETTEGYQPPPVY
180 190 200 210 220
>>CCDS12717.1 SYNGR4 gene_id:23546|Hs108|chr19 (234 aa)
initn: 500 init1: 346 opt: 498 Z-score: 598.3 bits: 118.0 E(32554): 5.3e-27
Smith-Waterman score: 498; 37.9% identity (68.2% similar) in 214 aa overlap (20-227:18-227)
10 20 30 40 50 60
pF1KB8 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
..:.:.:: :: .::..::.:....:: :. . ::
CCDS12 MHIPKSLQELANSEAVQFLRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
: : :::..:..: ::::.:: .:.::. .:.... . : :. ....:: .::
CCDS12 LNSNSVACSFAVGAGFLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
.:::.:::::: : ::. : :...:.:::::.::::..: :: :::: .. :. .
CCDS12 MGFCFLANQWQHSPPKEFLL--GSSSAQAAIAFTFFSILVWIFQAYLAFQ--DLRNDAPV
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 FSQDYMDPSQD--SSMPY----APYVEPNTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY
. ..: . ...: .: :.:::. ..... .: : :.
CCDS12 PYKRFLDEGGMVLTTLPLPSANSPVNMPTTGPNSLSYASSALSPCLTAPKSPRLAMMPDN
180 190 200 210 220 230
234 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:54:01 2016 done: Sat Nov 5 19:54:01 2016
Total Scan time: 1.990 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]