FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8646, 239 aa
  1>>>pF1KB8646 239 - 239 aa - 239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3829+/-0.000664; mu= 11.0781+/- 0.041
 mean_var=98.4802+/-19.682, 0's: 0 Z-trim(113.3): 17  B-trim: 0 in 0/51
 Lambda= 0.129241
 statistics sampled from 13909 (13921) to 13909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.428), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS33662.1 LDOC1L gene_id:84247|Hs108|chr22       ( 239) 1560 300.1 8.2e-82
CCDS55446.1 RGAG4 gene_id:340526|Hs108|chrX        ( 569)  311 67.5 2.1e-11


>>CCDS33662.1 LDOC1L gene_id:84247|Hs108|chr22            (239 aa)
 initn: 1560 init1: 1560 opt: 1560  Z-score: 1582.2  bits: 300.1 E(32554): 8.2e-82
Smith-Waterman score: 1560; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB8 MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB8 LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL
              190       200       210       220       230         

>>CCDS55446.1 RGAG4 gene_id:340526|Hs108|chrX             (569 aa)
 initn: 424 init1: 285 opt: 311  Z-score: 318.0  bits: 67.5 E(32554): 2.1e-11
Smith-Waterman score: 311; 45.6% identity (62.4% similar) in 125 aa overlap (74-191:120-243)

            50        60        70        80        90       100   
pF1KB8 STLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTS---
                                     :  : : :: .     . .:   :: .   
CCDS55 PPPRAEPDCISDDLLINVIQDRSTPDGPADPPLLPIPPPPALPPPASKEPPPQPPLAPLE
      90       100       110       120       130       140         

                110       120       130       140       150        
pF1KB8 LPE--PFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQP
        ::  ::::::  :: ::::.. :.  .  .::: :::::::.: .::::. :::   : 
CCDS55 RPEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISVTQE
     150       160       170       180       190       200         

      160       170       180         190       200       210      
pF1KB8 DSPLRNNYQGFLAELRRTYKSPL--RHARRAQIRKTSASNRAVRERQMLCRQLASAGTGP
        :::. :.  :: :.:. . .:.  : :..: :::                         
CCDS55 GSPLHANFPRFLDEIRKEFCGPIPPRVAKKA-IRKLKQGHCTLGSYADAFQFLAQFLSWD
     210       220       230       240        250       260        

        220       230                                              
pF1KB8 CPVHPASNGTSPAPALPARARNL                                     
                                                                   
CCDS55 DCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIPLPGVRNIIFP
      270       280       290       300       310       320        




239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:36:08 2016 done: Sat Nov  5 01:36:08 2016
 Total Scan time:  2.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]