FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8644, 153 aa
  1>>>pF1KB8644 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7367+/-0.000578; mu= 6.1230+/- 0.035
 mean_var=100.9941+/-20.047, 0's: 0 Z-trim(115.6): 7  B-trim: 3 in 1/51
 Lambda= 0.127622
 statistics sampled from 16114 (16119) to 16114 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.495), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS14019.1 CSDC2 gene_id:27254|Hs108|chr22        ( 153) 1078 207.5 2.7e-54
CCDS10537.1 CARHSP1 gene_id:23589|Hs108|chr16      ( 147)  647 128.1   2e-30


>>CCDS14019.1 CSDC2 gene_id:27254|Hs108|chr22             (153 aa)
 initn: 1078 init1: 1078 opt: 1078  Z-score: 1088.3  bits: 207.5 E(32554): 2.7e-54
Smith-Waterman score: 1078; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB8 MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
               70        80        90       100       110       120

              130       140       150   
pF1KB8 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS
       :::::::::::::::::::::::::::::::::
CCDS14 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS
              130       140       150   

>>CCDS10537.1 CARHSP1 gene_id:23589|Hs108|chr16           (147 aa)
 initn: 681 init1: 599 opt: 647  Z-score: 659.7  bits: 128.1 E(32554): 2e-30
Smith-Waterman score: 647; 64.7% identity (79.7% similar) in 153 aa overlap (1-153:1-147)

               10        20        30        40        50        60
pF1KB8 MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
       :.::   ::  :: :. .  .  : :  :: :    ::.:    .::::::.::::.:::
CCDS10 MSSEPPPPPQ-PPTHQASVGLLDT-PRSRERSPSPLRGNV----VPSPLPTRRTRTFSAT
               10         20         30            40        50    

               70        80        90       100       110       120
pF1KB8 ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
       .::: :::.::::: : ::.::::::: .:. :::.:.::.::::::::::::::::: :
CCDS10 VRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSI
           60        70        80        90       100       110    

              130       140       150   
pF1KB8 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS
       ::::.:.::::::.:.::: : ::::::.:..:
CCDS10 PPKNEKLQAVEVVITHLAPGTKHETWSGHVISS
          120       130       140       




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:53:38 2016 done: Sat Nov  5 19:53:38 2016
 Total Scan time:  1.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]