FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8635, 241 aa 1>>>pF1KB8635 241 - 241 aa - 241 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4358+/-0.000272; mu= 7.0255+/- 0.017 mean_var=166.5941+/-33.906, 0's: 0 Z-trim(124.0): 3 B-trim: 2389 in 1/56 Lambda= 0.099368 statistics sampled from 44721 (44725) to 44721 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.524), width: 16 Scan time: 7.490 The best scores are: opt bits E(85289) NP_976307 (OMIM: 609088) F-box and leucine-rich pr ( 247) 1678 251.3 1.1e-66 XP_016877575 (OMIM: 609088) PREDICTED: F-box and l ( 142) 782 122.6 3.5e-28 XP_005254377 (OMIM: 609088) PREDICTED: F-box and l ( 231) 773 121.5 1.2e-27 >>NP_976307 (OMIM: 609088) F-box and leucine-rich protei (247 aa) initn: 1678 init1: 1678 opt: 1678 Z-score: 1317.9 bits: 251.3 E(85289): 1.1e-66 Smith-Waterman score: 1678; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:7-247) 10 20 30 40 50 pF1KB8 MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB8 RPSETPPAPGVSWGPPPPGALVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: NP_976 RPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP 190 200 210 220 230 240 240 pF1KB8 GADAFPQ ::::::: NP_976 GADAFPQ >>XP_016877575 (OMIM: 609088) PREDICTED: F-box and leuci (142 aa) initn: 794 init1: 774 opt: 782 Z-score: 626.9 bits: 122.6 E(85289): 3.5e-28 Smith-Waterman score: 782; 90.6% identity (93.7% similar) in 127 aa overlap (1-127:7-133) 10 20 30 40 50 pF1KB8 MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_016 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRFF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE :. . .: : XP_016 IGRARWHYCGPLPPCLVESPST 130 140 >>XP_005254377 (OMIM: 609088) PREDICTED: F-box and leuci (231 aa) initn: 811 init1: 773 opt: 773 Z-score: 617.1 bits: 121.5 E(85289): 1.2e-27 Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:7-118) 10 20 30 40 50 pF1KB8 MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRCP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE XP_005 NLASVTLSGCGHVTDDCLARLLRCCPRLRALRLENCARVTNRTLAAVAADGRALQTLHVD 130 140 150 160 170 180 241 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 21:44:02 2016 done: Sat Nov 5 21:44:03 2016 Total Scan time: 7.490 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]