FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8585, 796 aa
  1>>>pF1KB8585 796 - 796 aa - 796 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8136+/-0.00116; mu= 17.7268+/- 0.070
 mean_var=67.1442+/-13.826, 0's: 0 Z-trim(102.3): 39  B-trim: 145 in 1/48
 Lambda= 0.156520
 statistics sampled from 6876 (6879) to 6876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.211), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS10721.1 VPS35 gene_id:55737|Hs108|chr16        ( 796) 5201 1184.0       0


>>CCDS10721.1 VPS35 gene_id:55737|Hs108|chr16             (796 aa)
 initn: 5201 init1: 5201 opt: 5201  Z-score: 6340.3  bits: 1184.0 E(32554):    0
Smith-Waterman score: 5201; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)

               10        20        30        40        50        60
pF1KB8 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDSLKHASNMLGELRTSMLSP
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS10 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
              730       740       750       760       770       780

              790      
pF1KB8 RESPESEGPIYEGLIL
       ::::::::::::::::
CCDS10 RESPESEGPIYEGLIL
              790      




796 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:33:18 2016 done: Fri Nov  4 13:33:18 2016
 Total Scan time:  3.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]