FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8579, 232 aa
  1>>>pF1KB8579 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5873+/-0.000619; mu= 9.3201+/- 0.038
 mean_var=96.6103+/-19.328, 0's: 0 Z-trim(114.4): 6  B-trim: 227 in 1/51
 Lambda= 0.130486
 statistics sampled from 14984 (14989) to 14984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.46), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS7315.1 DDIT4 gene_id:54541|Hs108|chr10         ( 232) 1532 297.6 4.7e-81
CCDS34036.1 DDIT4L gene_id:115265|Hs108|chr4       ( 193)  362 77.3   8e-15


>>CCDS7315.1 DDIT4 gene_id:54541|Hs108|chr10              (232 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1568.7  bits: 297.6 E(32554): 4.7e-81
Smith-Waterman score: 1532; 99.6% identity (99.6% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KB8 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KB8 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLPIEEC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS73 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
              190       200       210       220       230  

>>CCDS34036.1 DDIT4L gene_id:115265|Hs108|chr4            (193 aa)
 initn: 304 init1: 216 opt: 362  Z-score: 379.6  bits: 77.3 E(32554): 8e-15
Smith-Waterman score: 362; 35.0% identity (68.9% similar) in 180 aa overlap (48-223:6-183)

        20        30        40        50        60            70   
pF1KB8 SSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS-NSGFGPEE---DTAYL
                                     :: :..  :..   . :. ::    :  : 
CCDS34                          MVATGSLSSKNPASISELLDCGYHPESLLSDFDYW
                                        10        20        30     

            80        90       100       110       120       130   
pF1KB8 DGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLR
       : : .:. .:     .:  : ::...:.. :....  .   ...:.: .:........::
CCDS34 DYV-VPEPNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLR
           40        50        60        70        80        90    

           140       150       160       170       180       190   
pF1KB8 LAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLF
       :. .::::::: .. : .:  . :... ... : :.::::.::::.. ..  : ... .:
CCDS34 LSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFF
          100       110       120       130       140       150    

           200       210       220       230   
pF1KB8 SSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLPIEEC 
        : .  :  :: ..: ::.:::..::::::          
CCDS34 FSRGR-FSSGFRRTLILSSGFRLVKKKLYSLIGTTVIEGS
           160       170       180       190   




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:43:28 2016 done: Sat Nov  5 21:43:28 2016
 Total Scan time:  2.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]