FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8575, 339 aa
  1>>>pF1KB8575 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8871+/-0.00122; mu= 8.6331+/- 0.073
 mean_var=108.5076+/-21.121, 0's: 0 Z-trim(103.3): 41  B-trim: 10 in 1/51
 Lambda= 0.123124
 statistics sampled from 7354 (7367) to 7354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.226), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS6095.1 ERLIN2 gene_id:11160|Hs108|chr8         ( 339) 2139 391.1  7e-109
CCDS7487.2 ERLIN1 gene_id:10613|Hs108|chr10        ( 348) 1588 293.2 2.1e-79
CCDS34879.1 ERLIN2 gene_id:11160|Hs108|chr8        ( 152)  923 174.9 3.7e-44


>>CCDS6095.1 ERLIN2 gene_id:11160|Hs108|chr8              (339 aa)
 initn: 2139 init1: 2139 opt: 2139  Z-score: 2068.2  bits: 391.1 E(32554): 7e-109
Smith-Waterman score: 2139; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB8 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFGKD
              250       260       270       280       290       300

              310       320       330         
pF1KB8 IPNMFMDSAGSVSKQFEGLADKLSFGLEDEPLETATKEN
       :::::::::::::::::::::::::::::::::::::::
CCDS60 IPNMFMDSAGSVSKQFEGLADKLSFGLEDEPLETATKEN
              310       320       330         

>>CCDS7487.2 ERLIN1 gene_id:10613|Hs108|chr10             (348 aa)
 initn: 1607 init1: 1578 opt: 1588  Z-score: 1539.1  bits: 293.2 E(32554): 2.1e-79
Smith-Waterman score: 1588; 79.6% identity (94.2% similar) in 309 aa overlap (1-309:3-311)

                 10        20        30        40        50        
pF1KB8   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITS
         :.:  ..::.. ..  . :....:::::::..::::::::::: ::::.:.::::::.
CCDS74 MNMTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB8 YKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFN
       ..:::::::::::::::::::::::::.:::::::.:.: ::.:::.::::::::.::::
CCDS74 FRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFN
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB8 KIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEA
       :::::::::::.::::::::::::::::::: :::.::. :::::.:::::::::.::::
CCDS74 KIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEA
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB8 IRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKET
       ::::.::::.::::::::::::::::::::::::::.:::::.::::.: . ::::::::
CCDS74 IRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKET
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KB8 EKKISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFG
       ::.:::::::::::::::::::: :.: : : .:: :::::::.: ::.:::::::::::
CCDS74 EKRISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTPEYLELKKYQAIASNSKIYFG
              250       260       270       280       290       300

      300       310       320       330                
pF1KB8 KDIPNMFMDSAGSVSKQFEGLADKLSFGLEDEPLETATKEN       
       ..:::::.::.                                     
CCDS74 SNIPNMFVDSSCALKYSDIRTGRESSLPSKEALEPSGENVIQNKESTG
              310       320       330       340        

>>CCDS34879.1 ERLIN2 gene_id:11160|Hs108|chr8             (152 aa)
 initn: 940 init1: 923 opt: 923  Z-score: 906.2  bits: 174.9 E(32554): 3.7e-44
Smith-Waterman score: 923; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIR
       :::::::::::::::::::::                                       
CCDS34 HHELNQFCSVHTLQEVYIELFGLENDFSQESS                            
              130       140       150                              




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:18:38 2016 done: Fri Nov  4 13:18:38 2016
 Total Scan time:  2.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]