Result of FASTA (omim) for
pF1KB8566
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8566, 254 aa
1>>>pF1KB8566 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5167+/-0.000398; mu= 14.2323+/- 0.025
mean_var=88.9408+/-18.474, 0's: 0 Z-trim(114.4): 409 B-trim: 768 in 2/52
Lambda= 0.135995
statistics sampled from 23810 (24301) to 23810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16
Scan time: 6.280
The best scores are: opt bits E(85289)
NP_115520 (OMIM: 612909) ras-related protein Rab-6 ( 254) 1656 334.7 9.4e-92
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 1210 247.2 1.8e-65
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 1199 245.0 7.9e-65
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 1135 232.5 4.8e-61
NP_001230648 (OMIM: 179513) ras-related protein Ra ( 175) 1011 208.1 8.8e-54
XP_011511195 (OMIM: 615852) PREDICTED: ras-related ( 195) 980 202.0 6.5e-52
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215) 507 109.2 6e-24
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 493 106.5 4.1e-23
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 493 106.5 4.1e-23
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216) 493 106.5 4.1e-23
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216) 493 106.5 4.1e-23
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249) 493 106.6 4.5e-23
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215) 484 104.7 1.4e-22
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215) 484 104.7 1.4e-22
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215) 484 104.7 1.4e-22
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215) 484 104.7 1.4e-22
NP_006859 (OMIM: 605694) ras-related protein Rab-3 ( 195) 459 99.8 3.8e-21
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 445 97.1 2.7e-20
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 442 96.5 4.2e-20
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 441 96.3 4.6e-20
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 437 95.5 8.4e-20
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 437 95.5 8.4e-20
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 436 95.3 9.6e-20
NP_065724 (OMIM: 612966) ras-related protein Rab-2 ( 194) 431 94.3 1.7e-19
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 430 94.1 2.1e-19
XP_016881018 (OMIM: 605694) PREDICTED: ras-related ( 244) 428 93.8 3.1e-19
XP_016881017 (OMIM: 605694) PREDICTED: ras-related ( 248) 428 93.8 3.1e-19
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 424 92.9 4.6e-19
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216) 423 92.8 5.5e-19
NP_055814 (OMIM: 612398) ras-related protein Rab-2 ( 225) 423 92.8 5.7e-19
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 419 92.0 9.8e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 419 92.0 9.9e-19
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 414 91.0 1.8e-18
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 414 91.0 2e-18
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 413 90.8 2e-18
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 414 91.1 2.1e-18
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 413 90.8 2.2e-18
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 411 90.4 2.8e-18
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 406 89.4 5.7e-18
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 406 89.4 5.7e-18
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 405 89.2 6.1e-18
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 404 89.0 7.3e-18
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 400 88.2 1.2e-17
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 401 88.8 2.1e-17
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 401 88.8 2.1e-17
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 395 87.2 2.3e-17
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 395 87.3 2.4e-17
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 395 87.3 2.4e-17
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 395 87.3 2.4e-17
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 395 87.3 2.4e-17
>>NP_115520 (OMIM: 612909) ras-related protein Rab-6C [H (254 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1768.2 bits: 334.7 E(85289): 9.4e-92
Smith-Waterman score: 1656; 99.6% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_115 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
190 200 210 220 230 240
250
pF1KB8 ITFCNSSLLPVSWR
::::::::::::::
NP_115 ITFCNSSLLPVSWR
250
>>NP_002860 (OMIM: 179513) ras-related protein Rab-6A is (208 aa)
initn: 1210 init1: 1210 opt: 1210 Z-score: 1296.5 bits: 247.2 E(85289): 1.8e-65
Smith-Waterman score: 1210; 90.9% identity (94.2% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::.:::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
NP_002 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:: :.:::::::::.::::: :::::::::::::::::::::::::::::::::::::::
NP_002 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::::.:::::::: ::: :::: ::.:::::::::::::::::::::
NP_002 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:: ::::: :::::::::: ::::::::
NP_002 QDRSREDMIDIKLEKPQEQPVSEGGCSC
190 200
>>NP_942599 (OMIM: 179513) ras-related protein Rab-6A is (208 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1284.8 bits: 245.0 E(85289): 7.9e-65
Smith-Waterman score: 1199; 89.4% identity (94.2% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::.:::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
NP_942 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:. :.:::::::::.::::: :::::..::::::::::::::::::::::::::::::::
NP_942 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::::.:::::::: ::: :::: ::.:::::::::::::::::::::
NP_942 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:: ::::: :::::::::: ::::::::
NP_942 QDRSREDMIDIKLEKPQEQPVSEGGCSC
190 200
>>NP_057661 (OMIM: 615852) ras-related protein Rab-6B [H (208 aa)
initn: 1135 init1: 1135 opt: 1135 Z-score: 1217.0 bits: 232.5 E(85289): 4.8e-61
Smith-Waterman score: 1135; 82.7% identity (93.3% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::::::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
NP_057 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:. :.:::::::::.::::: :::::..:::::::::.::::::.:::::::::::::::
NP_057 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::...::::..:: :.: :::: :::::::::::::::.::::::..
NP_057 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:. :.: : ::::.:::: .:::::::
NP_057 QEKSKEGMIDIKLDKPQEPPASEGGCSC
190 200
>>NP_001230648 (OMIM: 179513) ras-related protein Rab-6A (175 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1086.5 bits: 208.1 E(85289): 8.8e-54
Smith-Waterman score: 1011; 90.8% identity (93.7% similar) in 174 aa overlap (35-208:2-175)
10 20 30 40 50 60
pF1KB8 GDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGL
:::::::::: :::::::::::::: :: :
NP_001 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRL
10 20 30
70 80 90 100 110 120
pF1KB8 RLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLV
.:::::::::.::::: :::::::::::::::::::::::::::::::::::::::: ::
NP_001 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 GNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMESTQDGS
::.::::::::::.:::::::: ::: :::: ::.::::::::::::::::::::::: :
NP_001 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 REDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSLITFC
:::: :::::::::: ::::::::
NP_001 REDMIDIKLEKPQEQPVSEGGCSC
160 170
>>XP_011511195 (OMIM: 615852) PREDICTED: ras-related pro (195 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1053.0 bits: 202.0 E(85289): 6.5e-52
Smith-Waterman score: 980; 80.5% identity (92.4% similar) in 185 aa overlap (24-208:11-195)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
:.:::::::: :::::::::: ::::::::::::::
XP_011 MWHMTRNWPLVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:. :.:::::::::.::::: :::::..:::::::::.::::::.:::::::::::::::
XP_011 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::...::::..:: :.: :::: :::::::::::::::.::::::..
XP_011 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:. :.: : ::::.:::: .:::::::
XP_011 QEKSKEGMIDIKLDKPQEPPASEGGCSC
170 180 190
>>NP_004153 (OMIM: 179512) ras-related protein Rab-5A is (215 aa)
initn: 500 init1: 500 opt: 507 Z-score: 550.9 bits: 109.2 E(85289): 6e-24
Smith-Waterman score: 507; 39.5% identity (69.8% similar) in 205 aa overlap (4-207:11-214)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSK
: . :: . .::::.:::..:.:.::. :: .: . .. :: ::..
NP_004 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 TMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT
:. :.: :. ...:::::::: .:: : : : . ::.::::::: .:: .. .:. ...
NP_004 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAA
. . ...:.: ::..:::.:: :. .:.. : .. :.:: :::..::...: .:
NP_004 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 LPGMESTQDGSREDMS-DIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNI
:: : . :. . . : .: . : .. ::
NP_004 LPKNEPQNPGANSARGRGVDLTEPTQPTRNQC-CSN
190 200 210
240 250
pF1KB8 GLNLFPSLITFCNSSLLPVSWR
>>XP_011523392 (OMIM: 604037) PREDICTED: ras-related pro (216 aa)
initn: 488 init1: 488 opt: 493 Z-score: 536.0 bits: 106.5 E(85289): 4.1e-23
Smith-Waterman score: 493; 39.0% identity (71.0% similar) in 200 aa overlap (4-200:12-211)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLS
: :: . .::::.:::..:.:.::. :: .: . .. :: ::.
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR
.:. :.: :. ...:::::::: .:: : : : . ::.:::::::...: .. .:. ...
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 TERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAA
. . ...:.:.::..:::.:: : .:.. : .. :.:: :::..::...: .:
XP_011 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB8 ALPGME---STQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCS
:: : .: .:. :.. ..: ..
XP_011 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
190 200 210
230 240 250
pF1KB8 VNIGLNLFPSLITFCNSSLLPVSWR
>>NP_004574 (OMIM: 604037) ras-related protein Rab-5C is (216 aa)
initn: 488 init1: 488 opt: 493 Z-score: 536.0 bits: 106.5 E(85289): 4.1e-23
Smith-Waterman score: 493; 39.0% identity (71.0% similar) in 200 aa overlap (4-200:12-211)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLS
: :: . .::::.:::..:.:.::. :: .: . .. :: ::.
NP_004 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR
.:. :.: :. ...:::::::: .:: : : : . ::.:::::::...: .. .:. ...
NP_004 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 TERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAA
. . ...:.:.::..:::.:: : .:.. : .. :.:: :::..::...: .:
NP_004 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB8 ALPGME---STQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCS
:: : .: .:. :.. ..: ..
NP_004 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
190 200 210
230 240 250
pF1KB8 VNIGLNLFPSLITFCNSSLLPVSWR
>>XP_011523393 (OMIM: 604037) PREDICTED: ras-related pro (216 aa)
initn: 488 init1: 488 opt: 493 Z-score: 536.0 bits: 106.5 E(85289): 4.1e-23
Smith-Waterman score: 493; 39.0% identity (71.0% similar) in 200 aa overlap (4-200:12-211)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLS
: :: . .::::.:::..:.:.::. :: .: . .. :: ::.
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR
.:. :.: :. ...:::::::: .:: : : : . ::.:::::::...: .. .:. ...
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 TERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAA
. . ...:.:.::..:::.:: : .:.. : .. :.:: :::..::...: .:
XP_011 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB8 ALPGME---STQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCS
:: : .: .:. :.. ..: ..
XP_011 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
190 200 210
230 240 250
pF1KB8 VNIGLNLFPSLITFCNSSLLPVSWR
254 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:13:09 2016 done: Fri Nov 4 13:13:10 2016
Total Scan time: 6.280 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]