FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8474, 841 aa
  1>>>pF1KB8474 841 - 841 aa - 841 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.9877+/-0.00138; mu= -13.7440+/- 0.081
 mean_var=542.3726+/-118.539, 0's: 0 Z-trim(112.6): 167  B-trim: 137 in 1/53
 Lambda= 0.055071
 statistics sampled from 13202 (13340) to 13202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.41), width:  16
 Scan time:  5.300

The best scores are:                                      opt bits E(32554)
CCDS35248.1 GRIPAP1 gene_id:56850|Hs108|chrX       ( 841) 5273 434.6 3.3e-121


>>CCDS35248.1 GRIPAP1 gene_id:56850|Hs108|chrX            (841 aa)
 initn: 5273 init1: 5273 opt: 5273  Z-score: 2289.5  bits: 434.6 E(32554): 3.3e-121
Smith-Waterman score: 5273; 99.9% identity (99.9% similar) in 841 aa overlap (1-841:1-841)

               10        20        30        40        50        60
pF1KB8 MAQALSEEEFQRMQAQLLELRTNNYQLSDELRKNGVELTSLRQKVAYLDKEFSKAQKALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAQALSEEEFQRMQAQLLELRTNNYQLSDELRKNGVELTSLRQKVAYLDKEFSKAQKALS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQMEQLEQENQQLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQMEQLEQENQQLKEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AAGAGVAQAGPLVDGELLRLQAENTALQKNVAALQERYGKEAGKFSAVSEGQGDPPGGPA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS35 AAGAGVAQAGPLVDGELLRLQAENTALQKNVAALQERYGKEAGKFSAVSEGQGDPPGGLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PTVLAPMPLAEVELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PTVLAPMPLAEVELKWEMEKEEKRLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SFCRLQTEKETLFNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAELRDQRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SFCRLQTEKETLFNDSRNKIEELQQRKEADHKAQLARTQKLQQELEAANQSLAELRDQRQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GERLEHAAALRALQDQVSIQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GERLEHAAALRALQDQVSIQSADAQEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 EQTTGLAAELQQQQAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EQTTGLAAELQQQQAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EARKSAEKRKAMLDELAMETLQEKSQHKEELGAVRLRHEKEVLGVRARYERELRELHEDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EARKSAEKRKAMLDELAMETLQEKSQHKEELGAVRLRHEKEVLGVRARYERELRELHEDK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 KRQEEELRGQIREEKARTRELETLQQTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRQEEELRGQIREEKARTRELETLQQTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 QEQEEALKQCREQHAAELKGKEEELQDVRDQLEQAQEERDCHLKTISSLKQEVKDTVDGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QEQEEALKQCREQHAAELKGKEEELQDVRDQLEQAQEERDCHLKTISSLKQEVKDTVDGQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 RILEKKGSAALKDLKRQLHLERKRADKLQERLQDILTNSKSRSGLEELVLSEMNSPSRTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RILEKKGSAALKDLKRQLHLERKRADKLQERLQDILTNSKSRSGLEELVLSEMNSPSRTQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 TGDSSSISSFSYREILREKESSAVPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TGDSSSISSFSYREILREKESSAVPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 EKWMLEEKVKHLEVSSASMAEDLCRKSAIIETYVMDSRIDVSVAAGHTDRSGLGSVLRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EKWMLEEKVKHLEVSSASMAEDLCRKSAIIETYVMDSRIDVSVAAGHTDRSGLGSVLRDL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 VKPGDENLREMNKKLQNMLEEQLTKNMHLHKDMEVLSQEIVRLSKECVGPPDPDLEPGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VKPGDENLREMNKKLQNMLEEQLTKNMHLHKDMEVLSQEIVRLSKECVGPPDPDLEPGET
              790       800       810       820       830       840

        
pF1KB8 S
       :
CCDS35 S
        




841 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:25:10 2016 done: Sat Nov  5 16:25:11 2016
 Total Scan time:  5.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]