Result of FASTA (omim) for
pF1KB8467
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8467, 449 aa
1>>>pF1KB8467 449 - 449 aa - 449 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6494+/-0.000411; mu= 21.0081+/- 0.026
mean_var=58.2429+/-11.545, 0's: 0 Z-trim(110.6): 67 B-trim: 311 in 1/50
Lambda= 0.168056
statistics sampled from 18949 (19023) to 18949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.223), width: 16
Scan time: 6.580
The best scores are: opt bits E(85289)
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 3014 739.4 4.5e-213
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 2782 683.1 3.9e-196
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 2781 682.9 4.6e-196
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 2774 681.2 1.5e-195
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 2772 680.7 2.1e-195
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 2772 680.7 2.1e-195
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 2679 658.2 1.2e-188
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 2553 627.6 1.8e-179
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 2541 624.7 1.4e-178
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 1905 470.4 2.8e-132
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1262 314.6 3.3e-85
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1251 311.9 2.1e-84
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1240 309.3 1.3e-83
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 1239 309.0 1.6e-83
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 1238 308.8 1.9e-83
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1238 308.8 1.9e-83
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1238 308.8 1.9e-83
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 1238 308.8 2e-83
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 1238 308.8 2e-83
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1235 308.1 3.1e-83
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1235 308.1 3.1e-83
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1220 304.4 3.9e-82
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 1201 299.8 9.8e-81
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 1186 296.2 1.2e-79
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 1139 284.8 2.9e-76
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 1103 276.1 1.3e-73
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 1058 265.1 2.2e-70
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 1058 265.1 2.2e-70
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 1057 264.9 2.7e-70
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 1053 263.9 5.3e-70
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 1045 261.9 2e-69
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 1045 261.9 2e-69
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 1034 259.3 1.3e-68
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 997 250.3 6.5e-66
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 989 248.4 2.4e-65
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 984 247.2 6.1e-65
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 900 226.8 7e-59
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 900 226.8 7e-59
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 799 202.4 2.1e-51
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 792 200.7 6.8e-51
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 779 197.4 4.4e-50
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 779 197.4 4.4e-50
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 726 184.5 3.2e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 534 138.1 4.7e-32
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 456 119.2 2.4e-26
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 433 113.5 7.8e-25
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 433 113.5 7.8e-25
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 410 107.9 3.5e-23
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 410 107.9 3.5e-23
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 410 107.9 3.5e-23
>>NP_061816 (OMIM: 605742,613180) tubulin alpha-8 chain (449 aa)
initn: 3014 init1: 3014 opt: 3014 Z-score: 3946.3 bits: 739.4 E(85289): 4.5e-213
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
:::::::::::::::::::::::::::::
NP_061 AREDLAALEKDYEEVGTDSFEEENEGEEF
430 440
>>NP_005991 (OMIM: 191110,616208) tubulin alpha-4A chain (448 aa)
initn: 2782 init1: 2782 opt: 2782 Z-score: 3642.3 bits: 683.1 E(85289): 3.9e-196
Smith-Waterman score: 2782; 90.0% identity (96.4% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
:::::::::::::::.:::::::.::::::: :: . .. . . :::::::: ::: ::
NP_005 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
NP_005 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_005 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
::::.::::::::::: ::.:.:.::::
NP_005 AREDMAALEKDYEEVGIDSYEDEDEGEE
430 440
>>NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain [Hom (450 aa)
initn: 2768 init1: 2768 opt: 2781 Z-score: 3641.0 bits: 682.9 E(85289): 4.6e-196
Smith-Waterman score: 2781; 90.7% identity (96.9% similar) in 450 aa overlap (1-449:1-450)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
::::::.::::::::::::::::.::::::: :: . .. . . ::::.::::::: ::
NP_005 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..:::::::::::.:::::::::::::::::::::::::::::.::: .:::::
NP_005 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.:::::::::::::::::::.::::::::.:::::::::::::::::::::
NP_005 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEE-NEGEEF
::::::::::::::::.:: : : .::::.
NP_005 AREDLAALEKDYEEVGVDSVEAEAEEGEEY
430 440 450
>>NP_006073 (OMIM: 602530) tubulin alpha-1B chain [Homo (451 aa)
initn: 2767 init1: 2767 opt: 2774 Z-score: 3631.8 bits: 681.2 E(85289): 1.5e-195
Smith-Waterman score: 2774; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
::::::.::::::::::::::::.::::::: :: . .. . . ::::.::::::: ::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::.:::::.::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
::::.:::::::::::.:: : :.: :::.
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_001257328 (OMIM: 602529,611603) tubulin alpha-1A ch (451 aa)
initn: 2765 init1: 2765 opt: 2772 Z-score: 3629.2 bits: 680.7 E(85289): 2.1e-195
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
::::::.::::::::::::::::.::::::: :: . .. . . ::::.::::::: ::
NP_001 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_001 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_001 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
::::.:::::::::::.:: : :.: :::.
NP_001 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_006000 (OMIM: 602529,611603) tubulin alpha-1A chain (451 aa)
initn: 2765 init1: 2765 opt: 2772 Z-score: 3629.2 bits: 680.7 E(85289): 2.1e-195
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
::::::.::::::::::::::::.::::::: :: . .. . . ::::.::::::: ::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
::::.:::::::::::.:: : :.: :::.
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_001265481 (OMIM: 191110,616208) tubulin alpha-4A ch (433 aa)
initn: 2679 init1: 2679 opt: 2679 Z-score: 3507.5 bits: 658.2 E(85289): 1.2e-188
Smith-Waterman score: 2679; 89.6% identity (96.3% similar) in 433 aa overlap (16-448:1-433)
10 20 30 40 50 60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
.:::::::.::::::: :: . .. . . :::::::: ::: ::
NP_001 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40
70 80 90 100 110 120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
NP_001 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_001 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
350 360 370 380 390 400
430 440
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
::::.::::::::::: ::.:.:.::::
NP_001 AREDMAALEKDYEEVGIDSYEDEDEGEE
410 420 430
>>NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 cha (383 aa)
initn: 2553 init1: 2553 opt: 2553 Z-score: 3343.2 bits: 627.6 E(85289): 1.8e-179
Smith-Waterman score: 2553; 100.0% identity (100.0% similar) in 383 aa overlap (67-449:1-383)
40 50 60 70 80 90
pF1KB8 DAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGK
::::::::::::::::::::::::::::::
NP_001 MIDLEPTVVDEVRAGTYRQLFHPEQLITGK
10 20 30
100 110 120 130 140 150
pF1KB8 EDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMER
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 LSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPII
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 SAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIK
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB8 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD
280 290 300 310 320 330
400 410 420 430 440
pF1KB8 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
340 350 360 370 380
>>NP_001257329 (OMIM: 602529,611603) tubulin alpha-1A ch (416 aa)
initn: 2534 init1: 2534 opt: 2541 Z-score: 3327.0 bits: 624.7 E(85289): 1.4e-178
Smith-Waterman score: 2541; 92.1% identity (98.0% similar) in 406 aa overlap (46-449:11-416)
20 30 40 50 60 70
pF1KB8 IGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVV
::::.::::::: ::::::::..::::::.
NP_001 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVI
10 20 30 40
80 90 100 110 120 130
pF1KB8 DEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGF
::::.:::::::::::::::::::::::::::::.::: :::::::::::.: :.:::::
NP_001 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGF
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB8 LIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL
:.:::::::::::::::::::::.::::::::::.:::::::::::::::::::::::::
NP_001 LVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTL
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB8 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEF
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
NP_001 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEF
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB8 QTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMAC
::::::::::::::.::::.:::::::::::::::::..:::: .:::::::::::::::
NP_001 QTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMAC
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB8 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV
:.::::::::::::.:::.:::::::::::::::::::::::::::::::::::::::::
NP_001 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV
290 300 310 320 330 340
380 390 400 410 420 430
pF1KB8 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV
350 360 370 380 390 400
440
pF1KB8 GTDSFEEENE--GEEF
:.:: : :.: :::.
NP_001 GVDSVEGEGEEEGEEY
410
>>XP_016860313 (OMIM: 191110,616208) PREDICTED: tubulin (295 aa)
initn: 1905 init1: 1905 opt: 1905 Z-score: 2495.7 bits: 470.4 E(85289): 2.8e-132
Smith-Waterman score: 1905; 94.6% identity (99.3% similar) in 295 aa overlap (154-448:1-295)
130 140 150 160 170 180
pF1KB8 KLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVE
:::::.::::::::::.:::::::::::::
XP_016 MERLSVDYGKKSKLEFSIYPAPQVSTAVVE
10 20 30
190 200 210 220 230 240
pF1KB8 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMV
::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .:::
XP_016 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB8 KCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV
:::::::::::::.::::::::::::.:::::::::.:::::::::::::::::::::::
XP_016 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB8 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
220 230 240 250 260 270
430 440
pF1KB8 DLAALEKDYEEVGTDSFEEENEGEEF
:.::::::::::: ::.:.:.::::
XP_016 DMAALEKDYEEVGIDSYEDEDEGEE
280 290
449 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:11:55 2016 done: Fri Nov 4 13:11:56 2016
Total Scan time: 6.580 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]