Result of FASTA (omim) for
pF1KB8463
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8463, 348 aa
1>>>pF1KB8463 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2630+/-0.000454; mu= 11.3480+/- 0.028
mean_var=81.9154+/-17.361, 0's: 0 Z-trim(109.2): 81 B-trim: 0 in 0/52
Lambda= 0.141707
statistics sampled from 17330 (17381) to 17330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.204), width: 16
Scan time: 7.880
The best scores are: opt bits E(85289)
NP_055248 (OMIM: 605663) radial spoke head 14 homo ( 348) 2194 458.7 8.3e-129
XP_011528451 (OMIM: 605663) PREDICTED: radial spok ( 398) 1688 355.3 1.3e-97
XP_016884263 (OMIM: 605663) PREDICTED: radial spok ( 402) 1681 353.9 3.5e-97
XP_011528454 (OMIM: 605663) PREDICTED: radial spok ( 402) 1681 353.9 3.5e-97
XP_011528452 (OMIM: 605663) PREDICTED: radial spok ( 402) 1681 353.9 3.5e-97
XP_011528453 (OMIM: 605663) PREDICTED: radial spok ( 402) 1681 353.9 3.5e-97
XP_011528456 (OMIM: 605663) PREDICTED: radial spok ( 334) 1227 261.0 2.6e-69
XP_011528457 (OMIM: 605663) PREDICTED: radial spok ( 270) 779 169.4 8e-42
>>NP_055248 (OMIM: 605663) radial spoke head 14 homolog (348 aa)
initn: 2194 init1: 2194 opt: 2194 Z-score: 2433.5 bits: 458.7 E(85289): 8.3e-129
Smith-Waterman score: 2194; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
250 260 270 280 290 300
310 320 330 340
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
310 320 330 340
>>XP_011528451 (OMIM: 605663) PREDICTED: radial spoke he (398 aa)
initn: 1678 init1: 1678 opt: 1688 Z-score: 1873.5 bits: 355.3 E(85289): 1.3e-97
Smith-Waterman score: 1977; 86.8% identity (86.8% similar) in 380 aa overlap (1-330:1-380)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260
pF1KB8 KDPVEHVKSNAAGALMFATVITE-------------------------------------
:::::::::::::::::::::::
XP_011 KDPVEHVKSNAAGALMFATVITEEMESHYVAQAGLELLGRIRGWMERSQLRPERQEMKRP
250 260 270 280 290 300
270 280 290 300 310
pF1KB8 -------------GKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKALQ
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPGRTQRRCKSPEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKALQ
310 320 330 340 350 360
320 330 340
pF1KB8 THVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
::::::::::::::::::::
XP_011 THVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
370 380 390
>>XP_016884263 (OMIM: 605663) PREDICTED: radial spoke he (402 aa)
initn: 1678 init1: 1678 opt: 1681 Z-score: 1865.7 bits: 353.9 E(85289): 3.5e-97
Smith-Waterman score: 1681; 96.8% identity (97.1% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
::::::::::::::::::::::: . ::: :: :
XP_016 KDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLELLGRIRGWMERSQLRPERQEMKR
250 260 270 280 290
310 320 330 340
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
XP_016 PGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECHQGPYHAGRGPRGPQGPADARAH
300 310 320 330 340 350
>>XP_011528454 (OMIM: 605663) PREDICTED: radial spoke he (402 aa)
initn: 1678 init1: 1678 opt: 1681 Z-score: 1865.7 bits: 353.9 E(85289): 3.5e-97
Smith-Waterman score: 1681; 96.8% identity (97.1% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
::::::::::::::::::::::: . ::: :: :
XP_011 KDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLELLGRIRGWMERSQLRPERQEMKR
250 260 270 280 290
310 320 330 340
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
XP_011 PGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECHQGPYHAGRGPRGPQGPADARAH
300 310 320 330 340 350
>>XP_011528452 (OMIM: 605663) PREDICTED: radial spoke he (402 aa)
initn: 1678 init1: 1678 opt: 1681 Z-score: 1865.7 bits: 353.9 E(85289): 3.5e-97
Smith-Waterman score: 1681; 96.8% identity (97.1% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
::::::::::::::::::::::: . ::: :: :
XP_011 KDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLELLGRIRGWMERSQLRPERQEMKR
250 260 270 280 290
310 320 330 340
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
XP_011 PGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECHQGPYHAGRGPRGPQGPADARAH
300 310 320 330 340 350
>>XP_011528453 (OMIM: 605663) PREDICTED: radial spoke he (402 aa)
initn: 1678 init1: 1678 opt: 1681 Z-score: 1865.7 bits: 353.9 E(85289): 3.5e-97
Smith-Waterman score: 1681; 96.8% identity (97.1% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
::::::::::::::::::::::: . ::: :: :
XP_011 KDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLELLGRIRGWMERSQLRPERQEMKR
250 260 270 280 290
310 320 330 340
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
XP_011 PGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECHQGPYHAGRGPRGPQGPADARAH
300 310 320 330 340 350
>>XP_011528456 (OMIM: 605663) PREDICTED: radial spoke he (334 aa)
initn: 1224 init1: 1224 opt: 1227 Z-score: 1365.3 bits: 261.0 E(85289): 2.6e-69
Smith-Waterman score: 1227; 95.7% identity (96.2% similar) in 210 aa overlap (69-278:1-209)
40 50 60 70 80 90
pF1KB8 DLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHS
::::::::::::::::::::::::::::::
XP_011 MENLKALLKDSNSMVRIKTTEVLHITASHS
10 20 30
100 110 120 130 140 150
pF1KB8 VGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 QVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 ISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLL
::::::::::::::::::::::::::::::::::::::::::::: . ::: :: :
XP_011 ISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLEL
160 170 180 190 200
280 290 300 310 320 330
pF1KB8 ELLHSPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAAR
XP_011 LGRIRGWMERSQLRPERQEMKRPGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECH
210 220 230 240 250 260
>>XP_011528457 (OMIM: 605663) PREDICTED: radial spoke he (270 aa)
initn: 776 init1: 776 opt: 779 Z-score: 871.8 bits: 169.4 E(85289): 8e-42
Smith-Waterman score: 779; 89.7% identity (91.8% similar) in 146 aa overlap (133-278:1-145)
110 120 130 140 150 160
pF1KB8 AFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEV
:: . . ::::::::::::::::::::::
XP_011 MQTLTIYTGAQEIISKGLISSLVWKLQVEV
10 20 30
170 180 190 200 210 220
pF1KB8 EEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISRE
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB8 GKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLH
::::::::::::::::::::::::::::::::::::::::: . ::: :: :
XP_011 GKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEEMESHYVAQA-GLELLGRI
100 110 120 130 140
290 300 310 320 330 340
pF1KB8 SPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAIS
XP_011 RGWMERSQLRPERQEMKRPGPGRTQRREVCGPGGTSHRPAPGAAALPHDHSAPECHQGPY
150 160 170 180 190 200
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:09:19 2016 done: Fri Nov 4 13:09:20 2016
Total Scan time: 7.880 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]