FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8463, 348 aa
  1>>>pF1KB8463 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2741+/-0.00108; mu= 10.7644+/- 0.064
 mean_var=65.3356+/-13.462, 0's: 0 Z-trim(102.6): 36  B-trim: 223 in 1/48
 Lambda= 0.158672
 statistics sampled from 7016 (7036) to 7016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.581), E-opt: 0.2 (0.216), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS13803.1 RSPH14 gene_id:27156|Hs108|chr22       ( 348) 2194 511.3 4.8e-145


>>CCDS13803.1 RSPH14 gene_id:27156|Hs108|chr22            (348 aa)
 initn: 2194 init1: 2194 opt: 2194  Z-score: 2717.5  bits: 511.3 E(32554): 4.8e-145
Smith-Waterman score: 2194; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KB8 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
              250       260       270       280       290       300

              310       320       330       340        
pF1KB8 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
              310       320       330       340        




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:09:19 2016 done: Fri Nov  4 13:09:19 2016
 Total Scan time:  2.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]