Result of FASTA (omim) for
pF1KB8462
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8462, 376 aa
1>>>pF1KB8462 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6044+/-0.000444; mu= 15.5915+/- 0.029
mean_var=262.3674+/-58.789, 0's: 0 Z-trim(118.9): 195 B-trim: 1892 in 1/53
Lambda= 0.079181
statistics sampled from 32023 (32366) to 32023 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.379), width: 16
Scan time: 8.900
The best scores are: opt bits E(85289)
NP_001076045 (OMIM: 612149) RNA binding protein fo ( 376) 2502 298.9 1.3e-80
XP_016884185 (OMIM: 612149) PREDICTED: RNA binding ( 377) 2490 297.5 3.3e-80
NP_001026865 (OMIM: 612149) RNA binding protein fo ( 380) 2483 296.7 5.8e-80
XP_005261494 (OMIM: 612149) PREDICTED: RNA binding ( 381) 2471 295.4 1.5e-79
XP_016884181 (OMIM: 612149) PREDICTED: RNA binding ( 398) 2456 293.7 5e-79
XP_005261489 (OMIM: 612149) PREDICTED: RNA binding ( 446) 2456 293.8 5.3e-79
XP_005261488 (OMIM: 612149) PREDICTED: RNA binding ( 447) 2444 292.4 1.4e-78
NP_001076048 (OMIM: 612149) RNA binding protein fo ( 450) 2437 291.6 2.4e-78
NP_001076047 (OMIM: 612149) RNA binding protein fo ( 451) 2425 290.2 6.2e-78
XP_005261487 (OMIM: 612149) PREDICTED: RNA binding ( 448) 2360 282.8 1.1e-75
XP_006724250 (OMIM: 612149) PREDICTED: RNA binding ( 452) 2341 280.6 4.8e-75
XP_016884183 (OMIM: 612149) PREDICTED: RNA binding ( 390) 2061 248.5 1.9e-65
XP_016884182 (OMIM: 612149) PREDICTED: RNA binding ( 391) 2049 247.2 4.9e-65
XP_005261492 (OMIM: 612149) PREDICTED: RNA binding ( 394) 2042 246.4 8.6e-65
XP_006724254 (OMIM: 612149) PREDICTED: RNA binding ( 395) 2030 245.0 2.2e-64
XP_016884178 (OMIM: 612149) PREDICTED: RNA binding ( 412) 2015 243.3 7.4e-64
XP_005261486 (OMIM: 612149) PREDICTED: RNA binding ( 460) 2015 243.4 7.9e-64
XP_016884180 (OMIM: 612149) PREDICTED: RNA binding ( 400) 2003 241.9 1.9e-63
XP_005261485 (OMIM: 612149) PREDICTED: RNA binding ( 461) 2003 242.0 2e-63
XP_006724253 (OMIM: 612149) PREDICTED: RNA binding ( 416) 1996 241.2 3.4e-63
XP_006724249 (OMIM: 612149) PREDICTED: RNA binding ( 464) 1996 241.2 3.6e-63
XP_016884179 (OMIM: 612149) PREDICTED: RNA binding ( 401) 1991 240.6 4.9e-63
XP_006724256 (OMIM: 612149) PREDICTED: RNA binding ( 391) 1984 239.8 8.4e-63
XP_016884175 (OMIM: 612149) PREDICTED: RNA binding ( 407) 1984 239.8 8.6e-63
XP_006724252 (OMIM: 612149) PREDICTED: RNA binding ( 417) 1984 239.8 8.7e-63
XP_016884176 (OMIM: 612149) PREDICTED: RNA binding ( 439) 1984 239.8 9e-63
XP_006724248 (OMIM: 612149) PREDICTED: RNA binding ( 465) 1984 239.9 9.2e-63
XP_006724255 (OMIM: 612149) PREDICTED: RNA binding ( 391) 1979 239.2 1.3e-62
XP_016884187 (OMIM: 612149) PREDICTED: RNA binding ( 366) 1978 239.0 1.3e-62
NP_055124 (OMIM: 612149) RNA binding protein fox-1 ( 367) 1966 237.7 3.4e-62
NP_001076046 (OMIM: 612149) RNA binding protein fo ( 370) 1959 236.9 5.9e-62
XP_016884184 (OMIM: 612149) PREDICTED: RNA binding ( 388) 1932 233.8 5.2e-61
XP_016884177 (OMIM: 612149) PREDICTED: RNA binding ( 436) 1932 233.9 5.5e-61
XP_005261490 (OMIM: 612149) PREDICTED: RNA binding ( 437) 1920 232.5 1.4e-60
XP_016884186 (OMIM: 612149) PREDICTED: RNA binding ( 374) 1911 231.4 2.7e-60
XP_006724257 (OMIM: 612149) PREDICTED: RNA binding ( 374) 1911 231.4 2.7e-60
XP_006724251 (OMIM: 612149) PREDICTED: RNA binding ( 441) 1901 230.4 6.4e-60
XP_016878828 (OMIM: 605104) PREDICTED: RNA binding ( 376) 1402 173.2 8.5e-43
XP_011520848 (OMIM: 605104) PREDICTED: RNA binding ( 417) 1394 172.4 1.7e-42
XP_016878816 (OMIM: 605104) PREDICTED: RNA binding ( 422) 1394 172.4 1.7e-42
NP_061193 (OMIM: 605104) RNA binding protein fox-1 ( 397) 1390 171.9 2.3e-42
NP_001135806 (OMIM: 605104) RNA binding protein fo ( 397) 1390 171.9 2.3e-42
XP_016878822 (OMIM: 605104) PREDICTED: RNA binding ( 397) 1390 171.9 2.3e-42
NP_001295046 (OMIM: 605104) RNA binding protein fo ( 425) 1390 172.0 2.4e-42
XP_016878813 (OMIM: 605104) PREDICTED: RNA binding ( 440) 1390 172.0 2.4e-42
XP_011520849 (OMIM: 605104) PREDICTED: RNA binding ( 394) 1382 171.0 4.3e-42
XP_016878821 (OMIM: 605104) PREDICTED: RNA binding ( 399) 1382 171.0 4.3e-42
XP_016878812 (OMIM: 605104) PREDICTED: RNA binding ( 448) 1382 171.1 4.6e-42
XP_016878824 (OMIM: 605104) PREDICTED: RNA binding ( 374) 1378 170.5 5.7e-42
XP_016878825 (OMIM: 605104) PREDICTED: RNA binding ( 374) 1378 170.5 5.7e-42
>>NP_001076045 (OMIM: 612149) RNA binding protein fox-1 (376 aa)
initn: 2502 init1: 2502 opt: 2502 Z-score: 1568.4 bits: 298.9 E(85289): 1.3e-80
Smith-Waterman score: 2502; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVG
310 320 330 340 350 360
370
pF1KB8 AVASLYRGGYSRFAPY
::::::::::::::::
NP_001 AVASLYRGGYSRFAPY
370
>>XP_016884185 (OMIM: 612149) PREDICTED: RNA binding pro (377 aa)
initn: 1928 init1: 1928 opt: 2490 Z-score: 1561.0 bits: 297.5 E(85289): 3.3e-80
Smith-Waterman score: 2490; 99.7% identity (99.7% similar) in 377 aa overlap (1-376:1-377)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 LYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 RGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 DGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGV
310 320 330 340 350 360
360 370
pF1KB8 GAVASLYRGGYSRFAPY
:::::::::::::::::
XP_016 GAVASLYRGGYSRFAPY
370
>>NP_001026865 (OMIM: 612149) RNA binding protein fox-1 (380 aa)
initn: 1717 init1: 1662 opt: 2483 Z-score: 1556.6 bits: 296.7 E(85289): 5.8e-80
Smith-Waterman score: 2483; 98.7% identity (98.9% similar) in 380 aa overlap (1-376:1-380)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 GGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
:::::::::: .:::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
310 320 330 340 350 360
360 370
pF1KB8 YGVGAVASLYRGGYSRFAPY
::::::::::::::::::::
NP_001 YGVGAVASLYRGGYSRFAPY
370 380
>>XP_005261494 (OMIM: 612149) PREDICTED: RNA binding pro (381 aa)
initn: 1412 init1: 1088 opt: 2471 Z-score: 1549.2 bits: 295.4 E(85289): 1.5e-79
Smith-Waterman score: 2471; 98.4% identity (98.7% similar) in 381 aa overlap (1-376:1-381)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_005 LYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 RGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPG
::::::::::: .::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAA
310 320 330 340 350 360
360 370
pF1KB8 SYGVGAVASLYRGGYSRFAPY
:::::::::::::::::::::
XP_005 SYGVGAVASLYRGGYSRFAPY
370 380
>>XP_016884181 (OMIM: 612149) PREDICTED: RNA binding pro (398 aa)
initn: 2456 init1: 2456 opt: 2456 Z-score: 1539.8 bits: 293.7 E(85289): 5e-79
Smith-Waterman score: 2456; 99.7% identity (100.0% similar) in 369 aa overlap (8-376:30-398)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGI
.::::::::::::::::::::::::::::::
XP_016 MSSDSMDQPRNPCENEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 PTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 QSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 AASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTV
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 YGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDG
310 320 330 340 350 360
340 350 360 370
pF1KB8 YGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
::::::::::::::::::::::::::::::::::::::
XP_016 YGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
370 380 390
>>XP_005261489 (OMIM: 612149) PREDICTED: RNA binding pro (446 aa)
initn: 2456 init1: 2456 opt: 2456 Z-score: 1539.3 bits: 293.8 E(85289): 5.3e-79
Smith-Waterman score: 2456; 99.7% identity (100.0% similar) in 369 aa overlap (8-376:78-446)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
XP_005 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQ
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 TQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 ENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 YAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRT
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 VYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSD
350 360 370 380 390 400
340 350 360 370
pF1KB8 GYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
:::::::::::::::::::::::::::::::::::::::
XP_005 GYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440
>>XP_005261488 (OMIM: 612149) PREDICTED: RNA binding pro (447 aa)
initn: 1928 init1: 1928 opt: 2444 Z-score: 1531.9 bits: 292.4 E(85289): 1.4e-78
Smith-Waterman score: 2444; 99.5% identity (99.7% similar) in 370 aa overlap (8-376:78-447)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
XP_005 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_005 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYS
350 360 370 380 390 400
340 350 360 370
pF1KB8 DGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
::::::::::::::::::::::::::::::::::::::::
XP_005 DGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440
>>NP_001076048 (OMIM: 612149) RNA binding protein fox-1 (450 aa)
initn: 1671 init1: 1616 opt: 2437 Z-score: 1527.5 bits: 291.6 E(85289): 2.4e-78
Smith-Waterman score: 2437; 98.4% identity (98.9% similar) in 373 aa overlap (8-376:78-450)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
NP_001 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQ
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 TQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 ENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 YAASSFQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRG
::::::::::::::::::::::::::::::::: .::::::::::::::::::::::
NP_001 YAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRG
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 RGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAA
350 360 370 380 390 400
340 350 360 370
pF1KB8 AYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
:::::::::::::::::::::::::::::::::::::::::::
NP_001 AYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440 450
>>NP_001076047 (OMIM: 612149) RNA binding protein fox-1 (451 aa)
initn: 1366 init1: 1088 opt: 2425 Z-score: 1520.1 bits: 290.2 E(85289): 6.2e-78
Smith-Waterman score: 2425; 98.1% identity (98.7% similar) in 374 aa overlap (8-376:78-451)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
NP_001 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
NP_001 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLR
:::::::::::::::::::::::::::::::::: .:::::::::::::::::::::
NP_001 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 GRGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAA
350 360 370 380 390 400
340 350 360 370
pF1KB8 AAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440 450
>>XP_005261487 (OMIM: 612149) PREDICTED: RNA binding pro (448 aa)
initn: 1450 init1: 1450 opt: 2360 Z-score: 1480.0 bits: 282.8 E(85289): 1.1e-75
Smith-Waterman score: 2360; 96.5% identity (98.1% similar) in 371 aa overlap (8-376:78-448)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
XP_005 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_005 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADL-YGGYAAYRYAQPATATAATAAAAAAAAY
:::::::::::::::::::.: :. . .: . :::::::::::::::::::::::::::
XP_005 TVYGAVRAVPPTAIPAYPGIVLQEPIISAKIPQGGYAAYRYAQPATATAATAAAAAAAAY
350 360 370 380 390 400
340 350 360 370
pF1KB8 SDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
:::::::::::::::::::::::::::::::::::::::::
XP_005 SDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440
376 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:08:43 2016 done: Fri Nov 4 13:08:45 2016
Total Scan time: 8.900 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]