Result of FASTA (ccds) for
pF1KB8462
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8462, 376 aa
1>>>pF1KB8462 376 - 376 aa - 376 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4746+/-0.00106; mu= 9.3198+/- 0.065
mean_var=193.1120+/-42.300, 0's: 0 Z-trim(111.1): 117 B-trim: 525 in 1/51
Lambda= 0.092293
statistics sampled from 11960 (12094) to 11960 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.372), width: 16
Scan time: 3.030
The best scores are: opt bits E(32554)
CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 376) 2502 345.4 5e-95
CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 380) 2483 342.8 2.9e-94
CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 451) 2425 335.2 6.9e-92
CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 367) 1966 274.0 1.5e-73
CCDS46699.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 370) 1959 273.1 2.9e-73
CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 397) 1390 197.3 1.9e-50
CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 425) 1390 197.4 2e-50
CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 392) 1343 191.1 1.5e-48
CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 418) 1336 190.2 2.9e-48
CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 395) 1324 188.5 8.5e-48
CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 370) 1070 154.7 1.2e-37
CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17 ( 312) 965 140.6 1.8e-33
>>CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22 (376 aa)
initn: 2502 init1: 2502 opt: 2502 Z-score: 1819.6 bits: 345.4 E(32554): 5e-95
Smith-Waterman score: 2502; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVG
310 320 330 340 350 360
370
pF1KB8 AVASLYRGGYSRFAPY
::::::::::::::::
CCDS46 AVASLYRGGYSRFAPY
370
>>CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 (380 aa)
initn: 1717 init1: 1662 opt: 2483 Z-score: 1805.8 bits: 342.8 E(32554): 2.9e-94
Smith-Waterman score: 2483; 98.7% identity (98.9% similar) in 380 aa overlap (1-376:1-380)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 GGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
:::::::::: .:::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
310 320 330 340 350 360
360 370
pF1KB8 YGVGAVASLYRGGYSRFAPY
::::::::::::::::::::
CCDS46 YGVGAVASLYRGGYSRFAPY
370 380
>>CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 (451 aa)
initn: 1366 init1: 1088 opt: 2425 Z-score: 1763.2 bits: 335.2 E(32554): 6.9e-92
Smith-Waterman score: 2425; 98.1% identity (98.7% similar) in 374 aa overlap (8-376:78-451)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
.:::::::::::::::::::::::::::::
CCDS43 PRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS43 IPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPE
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLR
:::::::::::::::::::::::::::::::::: .:::::::::::::::::::::
CCDS43 LYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLR
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 GRGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GRGRTVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAA
350 360 370 380 390 400
340 350 360 370
pF1KB8 AAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
410 420 430 440 450
>>CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 (367 aa)
initn: 1975 init1: 1404 opt: 1966 Z-score: 1434.0 bits: 274.0 E(32554): 1.5e-73
Smith-Waterman score: 1966; 99.0% identity (99.3% similar) in 300 aa overlap (1-299:1-300)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS13 LYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 RGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
CCDS13 RGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 DGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGV
CCDS13 PTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTPTMPLPLPLAMELALWRVYTEVATAD
310 320 330 340 350 360
>>CCDS46699.1 RBFOX2 gene_id:23543|Hs108|chr22 (370 aa)
initn: 1959 init1: 1662 opt: 1959 Z-score: 1428.9 bits: 273.1 E(32554): 2.9e-73
Smith-Waterman score: 1959; 97.7% identity (98.3% similar) in 303 aa overlap (1-299:1-303)
10 20 30 40 50 60
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 GGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
:::::::::: .:::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
.:
CCDS46 DMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTPTMPLPLPLAMELALWRVYTEVA
310 320 330 340 350 360
>>CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 (397 aa)
initn: 1354 init1: 764 opt: 1390 Z-score: 1019.1 bits: 197.3 E(32554): 1.9e-50
Smith-Waterman score: 1537; 62.8% identity (76.6% similar) in 414 aa overlap (1-376:1-397)
10 20 30 40 50
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--
:. .. .:::: ...::.:.::... : :: :::::.:: .:: . .:.:::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKR
::.:.:: .:.:.::: . :.: .:. : :. .: :::: ::: :::.:.:: :::
CCDS55 EHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLG
:::::::::::::::::::::: :.::.:::::.:::::::.::.::.. . ::. .
CCDS55 TVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGS
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 NDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTA
. ..: : .:::::: :::.:::.:::::::::::::.. ::. ::
CCDS55 SMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 IPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYH
:::: ::::::::::::.::::::::::::. :::: ::::.:::::.:::::
CCDS55 IPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAA--------AYSDSYGRVYAADPYH
300 310 320 330 340
350 360 370
pF1KB8 -ALAPAASYGVGAV--------------------------ASLYRGGYSRFAPY
::::: .:::::. ::.:::::.:::::
CCDS55 HALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
350 360 370 380 390
>>CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 (425 aa)
initn: 1277 init1: 764 opt: 1390 Z-score: 1018.7 bits: 197.4 E(32554): 2e-50
Smith-Waterman score: 1509; 66.3% identity (81.0% similar) in 374 aa overlap (1-362:44-400)
10 20 30
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPF
:. .. .:::: ...::.:.::... :
CCDS76 SFLDRTQHSDIKADCNTCVEIEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQF
20 30 40 50 60 70
40 50 60 70 80
pF1KB8 PPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSL
:: :::::.:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:.
CCDS76 APP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTA
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB8 T-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI
: :. .: :::: ::: :::.:.:: :::::::::::::::::::::::::::::::::
CCDS76 TQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB8 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG
:::::::::::::::::::::::::::::::::::::::::::::::::::: :.::.::
CCDS76 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 WKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAA
:::.:::::::.::.::.. . ::. .. ..: : .:::::: ::
CCDS76 WKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AA
260 270 280 290 300
270 280 290 300 310
pF1KB8 TTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQP
:.:::.:::::::::::::.. ::. :: :::: ::::::::::::.::::::::::::
CCDS76 TAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQP
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB8 ATATAATAAAAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAVASLYRGGYSRFAPY
. :::: ::::.:::::.::::: ::::: .:::::.
CCDS76 TPATAA--------AYSDSYGRVYAADPYHHALAPAPTYGVGAMPQGSSPSTDFRGAKLH
370 380 390 400 410
CCDS76 TSRPLLSGS
420
>>CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 (392 aa)
initn: 1363 init1: 764 opt: 1343 Z-score: 985.3 bits: 191.1 E(32554): 1.5e-48
Smith-Waterman score: 1545; 66.9% identity (80.8% similar) in 381 aa overlap (9-376:29-392)
10 20 30 40
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
::::: ...::.:.::... : :: :::::.
CCDS45 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
10 20 30 40 50
50 60 70 80 90
pF1KB8 EYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. : :. .: ::
CCDS45 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS45 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS45 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAH
:.::.::.. . ::. .. ..: : .:::::: :::.:::.::::
CCDS45 YSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAH
240 250 260 270 280 290
280 290 300 310 320
pF1KB8 LRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATATAATAA
:::::::::.. ::. :: :::: :::::. :: : :::::::::::. ::::
CCDS45 LRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAA---
300 310 320 330 340
330 340 350 360 370
pF1KB8 AAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAVASLYRGGYSRFAPY
::::.:::::.::::: ::::: .:::::.::.:::::.:::::
CCDS45 -----AYSDSYGRVYAADPYHHALAPAPTYGVGAMASIYRGGYNRFAPY
350 360 370 380 390
>>CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 (418 aa)
initn: 1434 init1: 764 opt: 1336 Z-score: 979.9 bits: 190.2 E(32554): 2.9e-48
Smith-Waterman score: 1483; 62.7% identity (75.7% similar) in 407 aa overlap (9-376:29-418)
10 20 30 40
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
::::: ...::.:.::... : :: :::::.
CCDS10 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
10 20 30 40 50
50 60 70 80 90
pF1KB8 EYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. : :. .: ::
CCDS10 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS10 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAH
:.::.::.. . ::. .. ..: : .:::::: :::.:::.::::
CCDS10 YSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAH
240 250 260 270 280 290
280 290 300 310 320
pF1KB8 LRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATATAATAA
:::::::::.. ::. :: :::: :::::. :: : :::::::::::. ::::
CCDS10 LRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAA---
300 310 320 330 340
330 340 350 360
pF1KB8 AAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAV-------------------------
::::.:::::.::::: ::::: .:::::.
CCDS10 -----AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSL
350 360 370 380 390 400
370
pF1KB8 -ASLYRGGYSRFAPY
::.:::::.:::::
CCDS10 QASIYRGGYNRFAPY
410
>>CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 (395 aa)
initn: 1209 init1: 764 opt: 1324 Z-score: 971.6 bits: 188.5 E(32554): 8.5e-48
Smith-Waterman score: 1328; 64.5% identity (78.5% similar) in 349 aa overlap (9-345:29-360)
10 20 30 40
pF1KB8 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
::::: ...::.:.::... : :: :::::.
CCDS10 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
10 20 30 40 50
50 60 70 80 90
pF1KB8 EYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. : :. .: ::
CCDS10 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS10 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAH
:.::.::.. . ::. .. ..: : .:::::: :::.:::.::::
CCDS10 YSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAH
240 250 260 270 280 290
280 290 300 310 320
pF1KB8 LRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATATAATAA
:::::::::.. ::. :: :::: :::::. :: : :::::::::::. ::::
CCDS10 LRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAA---
300 310 320 330 340
330 340 350 360 370
pF1KB8 AAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY
:::: :..:
CCDS10 -----AYSDRNQFVFVAADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP
350 360 370 380 390
376 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:08:42 2016 done: Fri Nov 4 13:08:43 2016
Total Scan time: 3.030 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]