Result of FASTA (omim) for
pF1KB8459
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8459, 468 aa
1>>>pF1KB8459 468 - 468 aa - 468 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1066+/-0.000354; mu= 10.1095+/- 0.022
mean_var=125.6016+/-24.843, 0's: 0 Z-trim(117.6): 9 B-trim: 0 in 0/56
Lambda= 0.114440
statistics sampled from 29738 (29747) to 29738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.349), width: 16
Scan time: 10.640
The best scores are: opt bits E(85289)
XP_011528135 (OMIM: 604646) PREDICTED: nuclear por ( 468) 3071 518.2 1.8e-146
XP_006724166 (OMIM: 604646) PREDICTED: nuclear por ( 468) 3071 518.2 1.8e-146
NP_009103 (OMIM: 604646) nuclear pore complex prot ( 468) 3071 518.2 1.8e-146
XP_005261371 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_005261369 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
NP_705931 (OMIM: 604646) nuclear pore complex prot ( 440) 2886 487.7 2.8e-137
XP_006724167 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_016884026 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_016884027 (OMIM: 604646) PREDICTED: nuclear por ( 218) 1425 246.3 6.4e-65
>>XP_011528135 (OMIM: 604646) PREDICTED: nuclear pore co (468 aa)
initn: 3071 init1: 3071 opt: 3071 Z-score: 2750.4 bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
370 380 390 400 410 420
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
430 440 450 460
>>XP_006724166 (OMIM: 604646) PREDICTED: nuclear pore co (468 aa)
initn: 3071 init1: 3071 opt: 3071 Z-score: 2750.4 bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
370 380 390 400 410 420
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
430 440 450 460
>>NP_009103 (OMIM: 604646) nuclear pore complex protein (468 aa)
initn: 3071 init1: 3071 opt: 3071 Z-score: 2750.4 bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
370 380 390 400 410 420
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
430 440 450 460
>>XP_005261371 (OMIM: 604646) PREDICTED: nuclear pore co (440 aa)
initn: 2886 init1: 2886 opt: 2886 Z-score: 2585.7 bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::
XP_005 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
340 350 360 370 380 390
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
400 410 420 430 440
>>XP_005261369 (OMIM: 604646) PREDICTED: nuclear pore co (440 aa)
initn: 2886 init1: 2886 opt: 2886 Z-score: 2585.7 bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::
XP_005 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
340 350 360 370 380 390
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
400 410 420 430 440
>>NP_705931 (OMIM: 604646) nuclear pore complex protein (440 aa)
initn: 2886 init1: 2886 opt: 2886 Z-score: 2585.7 bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::
NP_705 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
340 350 360 370 380 390
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
400 410 420 430 440
>>XP_006724167 (OMIM: 604646) PREDICTED: nuclear pore co (440 aa)
initn: 2886 init1: 2886 opt: 2886 Z-score: 2585.7 bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::
XP_006 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
340 350 360 370 380 390
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
400 410 420 430 440
>>XP_016884026 (OMIM: 604646) PREDICTED: nuclear pore co (440 aa)
initn: 2886 init1: 2886 opt: 2886 Z-score: 2585.7 bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)
10 20 30 40 50 60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
::::::::::::::::::::::::::::::::
XP_016 MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
10 20 30
70 80 90 100 110 120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
340 350 360 370 380 390
430 440 450 460
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
400 410 420 430 440
>>XP_016884027 (OMIM: 604646) PREDICTED: nuclear pore co (218 aa)
initn: 1425 init1: 1425 opt: 1425 Z-score: 1286.6 bits: 246.3 E(85289): 6.4e-65
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 218 aa overlap (251-468:1-218)
230 240 250 260 270 280
pF1KB8 SPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSS
::::::::::::::::::::::::::::::
XP_016 MEVASEKKTDPSSLGATSASFNFGKKVDSS
10 20 30
290 300 310 320 330 340
pF1KB8 VLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEE
40 50 60 70 80 90
350 360 370 380 390 400
pF1KB8 NDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTN
100 110 120 130 140 150
410 420 430 440 450 460
pF1KB8 LGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHK
160 170 180 190 200 210
pF1KB8 ILLEKKDA
::::::::
XP_016 ILLEKKDA
468 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:06:28 2016 done: Fri Nov 4 13:06:29 2016
Total Scan time: 10.640 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]