FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8459, 468 aa
  1>>>pF1KB8459 468 - 468 aa - 468 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9794+/-0.00088; mu= 11.0242+/- 0.053
 mean_var=120.2792+/-23.816, 0's: 0 Z-trim(110.0): 12  B-trim: 0 in 0/50
 Lambda= 0.116944
 statistics sampled from 11276 (11278) to 11276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.346), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS14062.1 NUP50 gene_id:10762|Hs108|chr22        ( 468) 3071 529.1 3.7e-150
CCDS14063.1 NUP50 gene_id:10762|Hs108|chr22        ( 440) 2886 497.9 8.8e-141


>>CCDS14062.1 NUP50 gene_id:10762|Hs108|chr22             (468 aa)
 initn: 3071 init1: 3071 opt: 3071  Z-score: 2809.3  bits: 529.1 E(32554): 3.7e-150
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
              370       380       390       400       410       420

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
              430       440       450       460        

>>CCDS14063.1 NUP50 gene_id:10762|Hs108|chr22             (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2641.0  bits: 497.9 E(32554): 8.8e-141
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
CCDS14                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440




468 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:06:27 2016 done: Fri Nov  4 13:06:27 2016
 Total Scan time:  3.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]