FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8455, 115 aa
  1>>>pF1KB8455 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9452+/-0.000279; mu= 11.9665+/- 0.017
 mean_var=56.7712+/-11.428, 0's: 0 Z-trim(118.7): 11  B-trim: 0 in 0/53
 Lambda= 0.170220
 statistics sampled from 31822 (31833) to 31822 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.373), width:  16
 Scan time:  4.310

The best scores are:                                      opt bits E(85289)
NP_002406 (OMIM: 153620,604302) macrophage migrati ( 115)  777 198.1 2.7e-51
NP_001077861 (OMIM: 602750) D-dopachrome decarboxy ( 118)  248 68.2 3.5e-12
NP_001346 (OMIM: 602750) D-dopachrome decarboxylas ( 118)  248 68.2 3.5e-12


>>NP_002406 (OMIM: 153620,604302) macrophage migration i  (115 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 1041.9  bits: 198.1 E(85289): 2.7e-51
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KB8 SLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA
               70        80        90       100       110     

>>NP_001077861 (OMIM: 602750) D-dopachrome decarboxylase  (118 aa)
 initn: 248 init1: 191 opt: 248  Z-score: 339.6  bits: 68.2 E(85289): 3.5e-12
Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-108:1-109)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70         80        90       100       110       
pF1KB8 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA  
       :. ::: .: :. :::.:  .  .:...: .. ::. : .. ... ..:         
NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        

>>NP_001346 (OMIM: 602750) D-dopachrome decarboxylase [H  (118 aa)
 initn: 248 init1: 191 opt: 248  Z-score: 339.6  bits: 68.2 E(85289): 3.5e-12
Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-108:1-109)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70         80        90       100       110       
pF1KB8 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA  
       :. ::: .: :. :::.:  .  .:...: .. ::. : .. ... ..:         
NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:03:58 2016 done: Fri Nov  4 13:03:58 2016
 Total Scan time:  4.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]