FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8455, 115 aa
  1>>>pF1KB8455 115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0926+/-0.000562; mu= 10.9981+/- 0.034
 mean_var=54.3195+/-10.767, 0's: 0 Z-trim(111.9): 7  B-trim: 0 in 0/52
 Lambda= 0.174019
 statistics sampled from 12717 (12721) to 12717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.391), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS13819.1 MIF gene_id:4282|Hs108|chr22           ( 115)  777 202.1 6.2e-53
CCDS13820.1 DDT gene_id:1652|Hs108|chr22           ( 118)  248 69.3   6e-13
CCDS42988.1 DDTL gene_id:100037417|Hs108|chr22     ( 134)  221 62.6 7.4e-11


>>CCDS13819.1 MIF gene_id:4282|Hs108|chr22                (115 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 1063.9  bits: 202.1 E(32554): 6.2e-53
Smith-Waterman score: 777; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KB8 SLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA
               70        80        90       100       110     

>>CCDS13820.1 DDT gene_id:1652|Hs108|chr22                (118 aa)
 initn: 248 init1: 191 opt: 248  Z-score: 345.9  bits: 69.3 E(32554): 6e-13
Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-108:1-109)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
CCDS13 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70         80        90       100       110       
pF1KB8 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA  
       :. ::: .: :. :::.:  .  .:...: .. ::. : .. ... ..:         
CCDS13 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        

>>CCDS42988.1 DDTL gene_id:100037417|Hs108|chr22          (134 aa)
 initn: 221 init1: 191 opt: 221  Z-score: 308.4  bits: 62.6 E(32554): 7.4e-11
Smith-Waterman score: 221; 40.0% identity (66.3% similar) in 95 aa overlap (1-94:1-95)

               10        20        30        40        50        60
pF1KB8 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
CCDS42 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KB8 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA    
       :. ::: .: :. :::.:  .  .:...: .. ::                         
CCDS42 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRFPTVLSTSPAAHGGPRCPGEIIEGK
               70        80        90       100       110       120

CCDS42 KSCLNEEALFIYFI
              130    




115 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:03:57 2016 done: Fri Nov  4 13:03:57 2016
 Total Scan time:  1.620 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]