FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8454, 533 aa
  1>>>pF1KB8454 533 - 533 aa - 533 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3214+/-0.000742; mu= 15.4318+/- 0.045
 mean_var=114.8432+/-22.439, 0's: 0 Z-trim(112.9): 9  B-trim: 0 in 0/53
 Lambda= 0.119680
 statistics sampled from 13616 (13619) to 13616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.418), width:  16
 Scan time:  3.770

The best scores are:                                      opt bits E(32554)
CCDS13994.2 MGAT3 gene_id:4248|Hs108|chr22         ( 533) 3801 667.0 1.5e-191


>>CCDS13994.2 MGAT3 gene_id:4248|Hs108|chr22              (533 aa)
 initn: 3801 init1: 3801 opt: 3801  Z-score: 3552.2  bits: 667.0 E(32554): 1.5e-191
Smith-Waterman score: 3801; 100.0% identity (100.0% similar) in 533 aa overlap (1-533:1-533)

               10        20        30        40        50        60
pF1KB8 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH
              430       440       450       460       470       480

              490       500       510       520       530   
pF1KB8 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV
              490       500       510       520       530   




533 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:02:48 2016 done: Fri Nov  4 13:02:49 2016
 Total Scan time:  3.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]