FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8431, 629 aa
  1>>>pF1KB8431 629 - 629 aa - 629 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0935+/-0.00109; mu= 15.9066+/- 0.066
 mean_var=86.5529+/-17.373, 0's: 0 Z-trim(105.1): 47  B-trim: 274 in 2/49
 Lambda= 0.137858
 statistics sampled from 8201 (8247) to 8201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS30737.1 EFCAB7 gene_id:84455|Hs108|chr1        ( 629) 4194 844.6       0


>>CCDS30737.1 EFCAB7 gene_id:84455|Hs108|chr1             (629 aa)
 initn: 4194 init1: 4194 opt: 4194  Z-score: 4509.4  bits: 844.6 E(32554):    0
Smith-Waterman score: 4194; 99.5% identity (99.7% similar) in 629 aa overlap (1-629:1-629)

               10        20        30        40        50        60
pF1KB8 MAISPRSDATFSSQKSTPSESPRTKKFPLTEEEIFYMNCRAAYLTVFKSSLENIISKDQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAISPRSDATFSSQKSTPSESPRTKKFPLTEEEIFYMNCRAAYLTVFKSSLENIISKDQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YLALQHAGRNPSQKTINKYWTPQTAKLNFDDFCIILRKEKPTSKAELLKSFKQLDVNDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YLALQHAGRNPSQKTINKYWTPQTAKLNFDDFCIILRKEKPTSKAELLKSFKQLDVNDDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CILHTDLYKFLTKRGEKMTREEVNAIINLADVNADGKFDYIKFCKLYMTTNEQCLKTTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 CILHTDLYKFLTKRGEKMTREEVNAIINLADVNADGKFDYIKFCKLYMTTNEQCLKTTLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KLEVDSKLMRHQFGNHIEGSPERDPSPVPKPSPKITRKTDPETFLNKGDTRSSLLSATRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KLEVDSKLMRHQFGNHIEGSPERDPSPVPKPSPKITRKTDPETFLNKGDTRSSLLSATRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 FKTSVSFIVTMGANGNRNSKLTEPNLIKDWQHMQSKGCFFLEEDGEIISHQYRMQIAQRS
       ::::::: ::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS30 FKTSVSFTVTMGANGNRNSKLMEPNLIKDWQHMQSKGCFFLEEDGEIISHQYRMQIAQRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MVYLTIKPLNLSQVEGKPSPWLSVDTALYILKENESQANLQLVCFTELRNREVFGWTGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MVYLTIKPLNLSQVEGKPSPWLSVDTALYILKENESQANLQLVCFTELRNREVFGWTGEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GPGIYWLIPSTTGCKLRKKIKPVTDEAQLVYRDETGELFLTKEFKSTLSDIFEVIDLDGN
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GPGIYWLIPSTTGCRLRKKIKPVTDEAQLVYRDETGELFLTKEFKSTLSDIFEVIDLDGN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 GLLSLEEYNFFELRTSGEKCDEDAWAVCRENFDTKRNELTRQGFMDLNLMEANDREGDPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GLLSLEEYNFFELRTSGEKCDEDAWAVCRENFDTKRNELTRQGFMDLNLMEANDREGDPC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 DLWVTLHSMGYNKALELTEACPFVIDIYAEKCKPKIKAVHMEACSGQLEKAICKSVLSNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DLWVTLHSMGYNKALELTEACPFVIDIYAEKCKPKIKAVHMEACSGQLEKAICKSVLSNG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 DAKVMDGYENIIVHTYSCDTWITSVIENKSDEKVIIHISNELSKNCINNRGLNIFAVEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DAKVMDGYENIIVHTYSCDTWITSVIENKSDEKVIIHISNELSKNCINNRGLNIFAVEVG
              550       560       570       580       590       600

              610       620         
pF1KB8 PKSTMVCQHVMPLNERQEWIYYCIYSLIS
       :::::::::::::::::::::::::::::
CCDS30 PKSTMVCQHVMPLNERQEWIYYCIYSLIS
              610       620         




629 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:02:45 2016 done: Sat Nov  5 22:02:45 2016
 Total Scan time:  2.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]