FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8429, 435 aa
  1>>>pF1KB8429 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0336+/-0.00144; mu= -1.8461+/- 0.081
 mean_var=332.7333+/-78.386, 0's: 0 Z-trim(106.7): 399  B-trim: 111 in 1/50
 Lambda= 0.070311
 statistics sampled from 8672 (9140) to 8672 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.281), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS407.1 STK40 gene_id:83931|Hs108|chr1           ( 435) 2868 305.7 5.7e-83
CCDS60089.1 STK40 gene_id:83931|Hs108|chr1         ( 440) 2848 303.7 2.3e-82


>>CCDS407.1 STK40 gene_id:83931|Hs108|chr1                (435 aa)
 initn: 2868 init1: 2868 opt: 2868  Z-score: 1603.1  bits: 305.7 E(32554): 5.7e-83
Smith-Waterman score: 2868; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KB8 MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILGPRLGNSPVPSIVQCLARKDGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILGPRLGNSPVPSIVQCLARKDGTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VEDTESSRMVKKMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VEDTESSRMVKKMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQMSNADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQMSNADS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGHDAQPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGHDAQPM
              370       380       390       400       410       420

              430     
pF1KB8 TSLDTAILAQRYLRK
       :::::::::::::::
CCDS40 TSLDTAILAQRYLRK
              430     

>>CCDS60089.1 STK40 gene_id:83931|Hs108|chr1              (440 aa)
 initn: 2635 init1: 2635 opt: 2848  Z-score: 1592.1  bits: 303.7 E(32554): 2.3e-82
Smith-Waterman score: 2848; 98.9% identity (98.9% similar) in 440 aa overlap (1-435:1-440)

               10        20        30             40        50     
pF1KB8 MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFIL-----GPRLGNSPVPSIVQCLAR
       :::::::::::::::::::::::::::::::::::::     ::::::::::::::::::
CCDS60 MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILALCAVGPRLGNSPVPSIVQCLAR
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB8 KDGTDDFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KDGTDDFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQD
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB8 RTCEIVEDTESSRMVKKMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RTCEIVEDTESSRMVKKMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETV
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB8 VIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRG
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KB8 SPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPE
              250       260       270       280       290       300

         300       310       320       330       340       350     
pF1KB8 DGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQM
              310       320       330       340       350       360

         360       370       380       390       400       410     
pF1KB8 SNADSSQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SNADSSQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGH
              370       380       390       400       410       420

         420       430     
pF1KB8 DAQPMTSLDTAILAQRYLRK
       ::::::::::::::::::::
CCDS60 DAQPMTSLDTAILAQRYLRK
              430       440




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:50:17 2016 done: Fri Nov  4 12:50:18 2016
 Total Scan time:  2.890 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]