Result of FASTA (ccds) for
pF1KB8425
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8425, 688 aa
1>>>pF1KB8425 688 - 688 aa - 688 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5774+/-0.000975; mu= 13.9734+/- 0.058
mean_var=99.4171+/-20.187, 0's: 0 Z-trim(107.6): 34 B-trim: 335 in 1/50
Lambda= 0.128630
statistics sampled from 9692 (9709) to 9692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.298), width: 16
Scan time: 4.100
The best scores are: opt bits E(32554)
CCDS1286.1 SCYL3 gene_id:57147|Hs108|chr1 ( 688) 4542 853.7 0
CCDS1287.1 SCYL3 gene_id:57147|Hs108|chr1 ( 742) 2827 535.5 1e-151
CCDS44646.1 SCYL1 gene_id:57410|Hs108|chr11 ( 791) 428 90.3 1.1e-17
CCDS41672.1 SCYL1 gene_id:57410|Hs108|chr11 ( 808) 428 90.3 1.2e-17
>>CCDS1286.1 SCYL3 gene_id:57147|Hs108|chr1 (688 aa)
initn: 4542 init1: 4542 opt: 4542 Z-score: 4557.6 bits: 853.7 E(32554): 0
Smith-Waterman score: 4542; 99.7% identity (99.9% similar) in 688 aa overlap (1-688:1-688)
10 20 30 40 50 60
pF1KB8 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 THNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 THNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 FKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 PEEPENQTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEEPENQTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 TSAEQKPIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELG
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TSGEQKPIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 LGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSS
610 620 630 640 650 660
670 680
pF1KB8 KFAAAEITEGEAEGWEEEGELNWEDNNW
::::::::::::::::::::::::::::
CCDS12 KFAAAEITEGEAEGWEEEGELNWEDNNW
670 680
>>CCDS1287.1 SCYL3 gene_id:57147|Hs108|chr1 (742 aa)
initn: 2827 init1: 2827 opt: 2827 Z-score: 2837.1 bits: 535.5 E(32554): 1e-151
Smith-Waterman score: 4258; 92.2% identity (92.4% similar) in 720 aa overlap (1-666:1-720)
10 20 30 40 50 60
pF1KB8 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 THNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 THNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
370 380 390 400 410 420
430
pF1KB8 FKRTAPSFTKNTDLSLE-------------------------------------------
:::::::::::::::::
CCDS12 FKRTAPSFTKNTDLSLEDSPMCVVCSHHSQISPILENPFSSIFPKCFFSGSTPINSKKHI
430 440 450 460 470 480
440 450 460 470 480
pF1KB8 -----------GDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPEN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QRDYYNTLLQTGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPEN
490 500 510 520 530 540
490 500 510 520 530 540
pF1KB8 QTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSAEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS12 QTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSGEQK
550 560 570 580 590 600
550 560 570 580 590 600
pF1KB8 PIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFT
610 620 630 640 650 660
610 620 630 640 650 660
pF1KB8 IQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAE
670 680 690 700 710 720
670 680
pF1KB8 ITEGEAEGWEEEGELNWEDNNW
CCDS12 ITEGEAEGWEEEGELNWEDNNW
730 740
>>CCDS44646.1 SCYL1 gene_id:57410|Hs108|chr11 (791 aa)
initn: 309 init1: 123 opt: 428 Z-score: 430.7 bits: 90.3 E(32554): 1.1e-17
Smith-Waterman score: 449; 28.1% identity (57.8% similar) in 431 aa overlap (15-423:19-434)
10 20 30 40 50
pF1KB8 MGSENSALKSYTLREPPFT-LPSGLAVYPAVLQ-DGKFASVFVYK----RENEDKV
::: ::. :.. . . :. .:.::: :.. .:
CCDS44 MWFFARDPVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQV
10 20 30 40 50 60
60 70 80 90 100
pF1KB8 NKAA-KHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALET------LSSAEVCAG
::: :..:::::: .: ... .:.::: : :: . :.. :. :. :
CCDS44 AKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 IYDILLALIFLHDRGHLTHNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSI
...:. :: :: . : :::::...:::.. .:::::.. . ... : ..:
CCDS44 LHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPR--KGI
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 RDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLV-ESLLTILNEQVSADVLSSFQQTL-
. . : :.. . . . : : . .: :. : . : . .. ... .::
CCDS44 PELEQYDPPELADSSGRVVREKWSA-DMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 --HSTLLNPIPKCRPALCTLLSH-----DFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFL
. :.. :: :: .:.. :. : :.:. ::. . .: :: .::. :
CCDS44 PHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQEL
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 LDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALF
.. . :.. ...: ::. . :.. :: .: : :. .:: .
CCDS44 SKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAV------VLTPL--FKVGK---FLSAEEY
300 310 320 330 340
340 350 360 370 380 390
pF1KB8 QSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVA
:...:::....: .. .:. ::...: ..... . .. :.:.:. :. ::. .:
CCDS44 QQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIRE
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 ITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSD
:..:. .:. :. :. .. : : : :
CCDS44 QTVKSMLLLAPKLN-EANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRH
410 420 430 440 450 460
>>CCDS41672.1 SCYL1 gene_id:57410|Hs108|chr11 (808 aa)
initn: 309 init1: 123 opt: 428 Z-score: 430.5 bits: 90.3 E(32554): 1.2e-17
Smith-Waterman score: 449; 28.1% identity (57.8% similar) in 431 aa overlap (15-423:19-434)
10 20 30 40 50
pF1KB8 MGSENSALKSYTLREPPFT-LPSGLAVYPAVLQ-DGKFASVFVYK----RENEDKV
::: ::. :.. . . :. .:.::: :.. .:
CCDS41 MWFFARDPVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQV
10 20 30 40 50 60
60 70 80 90 100
pF1KB8 NKAA-KHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALET------LSSAEVCAG
::: :..:::::: .: ... .:.::: : :: . :.. :. :. :
CCDS41 AKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 IYDILLALIFLHDRGHLTHNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSI
...:. :: :: . : :::::...:::.. .:::::.. . ... : ..:
CCDS41 LHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPR--KGI
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 RDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLV-ESLLTILNEQVSADVLSSFQQTL-
. . : :.. . . . : : . .: :. : . : . .. ... .::
CCDS41 PELEQYDPPELADSSGRVVREKWSA-DMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLV
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 --HSTLLNPIPKCRPALCTLLSH-----DFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFL
. :.. :: :: .:.. :. : :.:. ::. . .: :: .::. :
CCDS41 PHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQEL
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 LDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALF
.. . :.. ...: ::. . :.. :: .: : :. .:: .
CCDS41 SKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAV------VLTPL--FKVGK---FLSAEEY
300 310 320 330 340
340 350 360 370 380 390
pF1KB8 QSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVA
:...:::....: .. .:. ::...: ..... . .. :.:.:. :. ::. .:
CCDS41 QQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIRE
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 ITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSD
:..:. .:. :. :. .. : : : :
CCDS41 QTVKSMLLLAPKLN-EANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRH
410 420 430 440 450 460
688 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:47:32 2016 done: Fri Nov 4 12:47:33 2016
Total Scan time: 4.100 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]