Result of FASTA (ccds) for
pF1KB8361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8361, 144 aa
1>>>pF1KB8361 144 - 144 aa - 144 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5326+/-0.000789; mu= 16.6766+/- 0.048
mean_var=85.7676+/-16.495, 0's: 0 Z-trim(110.4): 26 B-trim: 51 in 1/49
Lambda= 0.138488
statistics sampled from 11576 (11593) to 11576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.356), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 ( 144) 1026 213.8 2.9e-56
CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 ( 145) 520 112.7 7.9e-26
CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 ( 142) 487 106.1 7.5e-24
CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 ( 138) 462 101.1 2.4e-22
CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 ( 211) 414 91.8 2.4e-19
CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 ( 165) 363 81.4 2.4e-16
CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 ( 148) 338 76.4 7.1e-15
>>CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 (144 aa)
initn: 1026 init1: 1026 opt: 1026 Z-score: 1123.6 bits: 213.8 E(32554): 2.9e-56
Smith-Waterman score: 1026; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KB8 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
70 80 90 100 110 120
130 140
pF1KB8 NKTTYNKKYQYYSNKHCRGSTPRC
::::::::::::::::::::::::
CCDS20 NKTTYNKKYQYYSNKHCRGSTPRC
130 140
>>CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 (145 aa)
initn: 495 init1: 329 opt: 520 Z-score: 577.2 bits: 112.7 E(32554): 7.9e-26
Smith-Waterman score: 520; 46.9% identity (73.1% similar) in 145 aa overlap (1-144:1-145)
10 20 30 40 50 60
pF1KB8 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
:. :: ..... :.. .:...:...:.: .::: ::: ::::::.::::.:::::
CCDS20 MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDS-CRSQLCECDKAAATCFA
: :: :::::: .:. .::. :... : . : :. . : :..::: ::: .: :.
CCDS20 DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK
70 80 90 100 110 120
120 130 140
pF1KB8 RNKTTYNKKYQYYSNKHCRGSTPRC
:: ::.:. ..: ::::.:: :
CCDS20 RNLDTYQKRLRFYWRPHCRGQTPGC
130 140
>>CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 (142 aa)
initn: 500 init1: 440 opt: 487 Z-score: 541.6 bits: 106.1 E(32554): 7.5e-24
Smith-Waterman score: 487; 53.6% identity (67.4% similar) in 138 aa overlap (9-144:6-142)
10 20 30 40 50
pF1KB8 MKTLLLLAVIMIFGLLQA--HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKD
:.... :: : ::::.: ::. ::: .::.:. :::.::.:: : :
CCDS20 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGK-SALQYNDYGCYCGIGGSHWPVD
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 ATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF
:: :: .::::: :::: :: :. .: :: : : :: . .:. ::::: :: ::
CCDS20 QTDWCCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCF
60 70 80 90 100 110
120 130 140
pF1KB8 ARNKTTYNKKYQYYSNKHCRGSTPRC
:: :::.:: .: :: : : :: :
CCDS20 RRNLGTYNRKYAHYPNKLCTGPTPPC
120 130 140
>>CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 (138 aa)
initn: 469 init1: 455 opt: 462 Z-score: 514.8 bits: 101.1 E(32554): 2.4e-22
Smith-Waterman score: 462; 45.3% identity (70.8% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB8 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
:: :: :: .. .. ..:.:.... ::. .:::.: .::::::.:: ::::.:::.:
CCDS20 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
: :: .:: :: :::..::. . :::. . . .:: :. .:: ::. . :. :
CCDS20 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
70 80 90 100 110 120
130 140
pF1KB8 NKTTYNKKYQYYSNKHCRGSTPRC
: .:: .:::. : :
CCDS20 NLRSYNPQYQYFPNILCS
130
>>CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 (211 aa)
initn: 349 init1: 296 opt: 414 Z-score: 460.9 bits: 91.8 E(32554): 2.4e-19
Smith-Waterman score: 414; 38.8% identity (67.3% similar) in 147 aa overlap (1-144:44-188)
10 20 30
pF1KB8 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIK
:: .. .:.. : :::.:.:.. :..
CCDS20 KKVLDRCFSGWRGPRFGASCPSRTSRSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVE
20 30 40 50 60 70
40 50 60 70 80
pF1KB8 LTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFS-
.::. : ::. :::.::.::::.::: .: :: .:::::..: .:: : .
CCDS20 AVTGRSAILSFVGYGCYCGLGGRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTI
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB8 NSGSRITCA--KQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
.....:.:. .. : .: : ::: . :. . :: ..:. . : .:.: :: :
CCDS20 ENNTEIVCSDLNKTECDKQTCMCDKNMVLCLMNQ--TYREEYRGFLNVYCQGPTPNCSIY
140 150 160 170 180 190
CCDS20 EPPPEEVTCSHQSPAPPAPP
200 210
>>CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 (165 aa)
initn: 336 init1: 211 opt: 363 Z-score: 407.0 bits: 81.4 E(32554): 2.4e-16
Smith-Waterman score: 371; 35.7% identity (64.9% similar) in 154 aa overlap (4-144:13-164)
10 20 30
pF1KB8 MKTLLLLAVIMIFGLLQAHGN-----LVNFHR--MIKLT-----TGKEAAL
:::: .... :: . :. .. :: ...:. .: .. .
CCDS10 MGPLPVCLPIMLLLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCVGPRTPI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 SYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK
.: ::: ::.::.:.:.:: : :: ::::: : :. ::. : :... .. . :.
CCDS10 AYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGP
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 -QDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
...:. ::.::. :.:.: .: :: :: .: . :. ..:.:
CCDS10 AENKCQELLCKCDQEIANCLA--QTEYNLKYLFYPQFLCEPDSPKCD
130 140 150 160
>>CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 (148 aa)
initn: 316 init1: 197 opt: 338 Z-score: 380.6 bits: 76.4 E(32554): 7.1e-15
Smith-Waterman score: 338; 38.8% identity (67.1% similar) in 152 aa overlap (1-138:1-147)
10 20 30 40 50
pF1KB8 MKTLLLLAVIMIFGLLQAHGN---LVNFHRMIK-LTTGKEAALSYGFYGCHCGVGGRGSP
:: ::.:::.. . .. . . .:..::: . :.. : :. :::.::.:: :.:
CCDS91 MK-LLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTP
10 20 30 40 50
60 70 80 90 100
pF1KB8 KDATDRCCVTHDCCYKRLEK-RGCGTKFL-------SYKFSNSGSRITCAKQDS-CRSQL
: :.:: ::: :: . .: .: ::: .:..: ::: :::..... :.. .
CCDS91 VDELDKCCQTHDNCYDQAKKLDSC--KFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFI
60 70 80 90 100 110
110 120 130 140
pF1KB8 CECDKAAATCFARNKTTYNKKYQYY-SNKHCRGSTPRC
:.::. :: :: .:. ::: .. ..:.:.
CCDS91 CNCDRNAAICF--SKAPYNKAHKNLDTKKYCQS
120 130 140
144 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:08:18 2016 done: Fri Nov 4 12:08:18 2016
Total Scan time: 1.690 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]