FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8346, 127 aa
  1>>>pF1KB8346 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7314+/-0.000676; mu= 9.2028+/- 0.041
 mean_var=78.9934+/-15.715, 0's: 0 Z-trim(111.5): 9  B-trim: 559 in 1/52
 Lambda= 0.144304
 statistics sampled from 12460 (12463) to 12460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.383), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5          ( 127)  863 188.2 1.2e-48
CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2       ( 123)  531 119.0 7.4e-28


>>CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5               (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 986.9  bits: 188.2 E(32554): 1.2e-48
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS42 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
CCDS42 GVKYGNI
              

>>CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2            (123 aa)
 initn: 287 init1: 268 opt: 531  Z-score: 613.5  bits: 119.0 E(32554): 7.4e-28
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)

               10         20        30        40        50         
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
CCDS46 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
       ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
CCDS46 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
      60        70         80        90       100       110        

     120       
pF1KB8 PGVKYGNI
       :: ::   
CCDS46 PGEKY   
      120      




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:58:18 2016 done: Fri Nov  4 11:58:18 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]