Result of FASTA (omim) for
pF1KB8338
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8338, 272 aa
1>>>pF1KB8338 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7879+/-0.000345; mu= 10.5279+/- 0.022
mean_var=172.8244+/-35.865, 0's: 0 Z-trim(120.6): 217 B-trim: 397 in 2/51
Lambda= 0.097560
statistics sampled from 35874 (36166) to 35874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.424), width: 16
Scan time: 6.840
The best scores are: opt bits E(85289)
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 1894 278.0 1.3e-74
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 693 108.9 9.8e-24
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 592 94.7 1.8e-19
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 510 83.3 6.8e-16
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 438 73.2 7.5e-13
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 419 70.5 4.8e-12
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 414 69.9 8.8e-12
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 350 60.8 4e-09
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 335 58.6 1.6e-08
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 333 58.3 1.9e-08
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 329 57.9 3.5e-08
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 319 56.4 7.8e-08
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 318 56.2 8.1e-08
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 309 54.8 1.6e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 305 54.4 2.9e-07
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 304 54.2 3e-07
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 301 53.7 3.7e-07
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 53.5 4e-07
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 300 53.5 4e-07
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 53.5 4e-07
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 300 53.7 4.7e-07
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 297 53.2 5.6e-07
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 295 53.0 8.2e-07
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 290 52.2 1.1e-06
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 287 51.7 1.5e-06
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 287 51.7 1.5e-06
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 288 52.1 1.7e-06
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 278 50.1 2.1e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 279 50.6 3e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 280 50.8 3.2e-06
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 279 50.6 3.4e-06
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 278 50.5 3.5e-06
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 277 50.5 4.8e-06
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 276 50.3 4.8e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 279 50.9 4.8e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 279 50.9 4.8e-06
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 270 49.3 7.7e-06
NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 269 49.3 9.3e-06
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 269 49.4 1.1e-05
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 269 49.4 1.2e-05
NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 265 48.7 1.4e-05
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 259 47.6 1.7e-05
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 259 47.8 2.3e-05
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 258 47.7 2.6e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 259 47.9 2.6e-05
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 1894 init1: 1894 opt: 1894 Z-score: 1460.4 bits: 278.0 E(85289): 1.3e-74
Smith-Waterman score: 1894; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
190 200 210 220 230 240
250 260 270
pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
::::::::::::::::::::::::::::::::
NP_689 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
250 260 270
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 800 init1: 537 opt: 693 Z-score: 547.1 bits: 108.9 E(85289): 9.8e-24
Smith-Waterman score: 824; 51.3% identity (70.4% similar) in 277 aa overlap (1-272:1-258)
10 20 30 40 50
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP--RQAATLAEHPDFSPCSFQS
:..:: ..:::::: :.. : : :. .:. :.: ..: : .. . . :: :::
NP_008 MSATGPISNYYVDS-LISHDNEDLLA-SRF-PATGAHPAAARPSGLVPDCSDFPSCSFAP
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 KATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGA
: .::..:: :: . .. .::: :: :: ..: : ::::.:::: ::
NP_008 KPAVFSTSWAPVPSQSS-----VVYH-----PY-GPQPHLGA---DTRYMRTWLEPLSGA
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LSFAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE
.:: ..:.. : :..::. .::.:: . . : :: ::: :.. :. :
NP_008 VSFPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NNAENESGG--DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR
.: : .: .::.::.:::.::::::::::::::.:::::::::::::::::::
NP_008 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR
170 180 190 200 210 220
240 250 260 270
pF1KB8 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
::::::.:::::::::::::::::::::.::... :
NP_008 RYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
230 240 250 260
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 704 init1: 485 opt: 592 Z-score: 470.5 bits: 94.7 E(85289): 1.8e-19
Smith-Waterman score: 761; 48.7% identity (70.5% similar) in 271 aa overlap (1-271:1-250)
10 20 30 40 50 60
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
:. .:.:..:::::.. . ... ... : .. :: . ::: .: :::: ::
NP_076 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASS-RQPGH-AEHLEFPSCSFQPKA
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
:::::: :. .....:. ::: ::..::. : : ..::.:.::::.: .
NP_076 PVFGASWAPLSPHASGSLPS-VYH-----PYIQPQG-VPPA--ESRYLRTWLEPAPRG--
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
. :.. ..: ::: . :. : :: : : : ...:. : .:
NP_076 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG----DNK
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
:.. :: : .::.::::::::.:::::::::.::::::::::::::::::::.:::
NP_076 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA
160 170 180 190 200 210
250 260 270
pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::.:::::::::::::::::.::...:.
NP_076 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
220 230 240 250
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 688 init1: 494 opt: 510 Z-score: 406.3 bits: 83.3 E(85289): 6.8e-16
Smith-Waterman score: 645; 44.2% identity (57.1% similar) in 312 aa overlap (32-268:49-347)
10 20 30 40 50 60
pF1KB8 ATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKAT
:. ... : ::: :: :. ::: ...
NP_055 NYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGP--AATAAE---FASCSFAPRSA
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB8 VFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPD-GRYMRSWLEPTPGALS
::.:::. : . :::. .:::: : :.::.: . :::.:::.:: :: .
NP_055 VFSASWSAV----PSQPPAAAAMSGLYHPYV-PPPPLAASASEPGRYVRSWMEPLPGFPG
80 90 100 110 120
130 140 150 160
pF1KB8 FAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLSLTDYACG
:: :: : :::::: .: . :. . : : .. . .
NP_055 GAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTSSSSTSLS
130 140 150 160 170 180
170 180
pF1KB8 SPP------VDREKQPSEG------AFSENNAENESGGDKP-------------------
: : ::.: : : .: ...: .:: :
NP_055 SSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSAC
190 200 210 220 230 240
190 200 210 220
pF1KB8 ---PI--------------------DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFL
:: :::::::::.::::::::::::::.::::::::::
NP_055 SDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFL
250 260 270 280 290 300
230 240 250 260 270
pF1KB8 FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::::::::.:::::::::::::::::::::..:..
NP_055 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
310 320 330 340 350
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 446 init1: 392 opt: 438 Z-score: 351.7 bits: 73.2 E(85289): 7.5e-13
Smith-Waterman score: 438; 40.9% identity (63.1% similar) in 203 aa overlap (69-267:134-329)
40 50 60 70 80 90
pF1KB8 PRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPV
: : . ::. :.. . ..:
NP_059 SVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPH
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 AAAAPDGRY---MRSWLEPTPGALSFAGLPSSRPYGIKPE-PLSARRGDCPTLDTHTLSL
..: : . .:. :.: : : .. . :: : : . :. ::
NP_059 CSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSF---PETPKSDSQTPSPNEIKTEQSL
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYT
. ::: ..... . . : ....::. : : .: ..::: :.: ::::::::
NP_059 AG-PKGSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYT
230 240 250 260 270
220 230 240 250 260 270
pF1KB8 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::::::::::::.:: :... .:::.:::::::::::::.::.:..
NP_059 KHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELT
280 290 300 310 320 330
NP_059 SNFNFT
340
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 412 init1: 383 opt: 419 Z-score: 337.3 bits: 70.5 E(85289): 4.8e-12
Smith-Waterman score: 419; 53.4% identity (73.7% similar) in 133 aa overlap (135-267:203-327)
110 120 130 140 150 160
pF1KB8 GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV
::.: :. :: ... : : :. :
NP_002 SSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVS---GQEPTKVSQVES--PEAKGGLPE
180 190 200 210 220
170 180 190 200 210 220
pF1KB8 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE
.: .. : . :.:: : : ..:..::: :.: ::::::::::::::::::
NP_002 ERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKE
230 240 250 260 270 280
230 240 250 260 270
pF1KB8 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::.:: :... .:::.:::::::::::::.::....
NP_002 FLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS
290 300 310 320 330 340
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 463 init1: 397 opt: 414 Z-score: 332.5 bits: 69.9 E(85289): 8.8e-12
Smith-Waterman score: 431; 48.8% identity (66.0% similar) in 162 aa overlap (117-267:237-397)
90 100 110 120 130 140
pF1KB8 HHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT
:: : . : .: . . : :.. .:
NP_061 GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPA-LASGSADAAR
210 220 230 240 250 260
150 160 170 180 190
pF1KB8 LDTHTLSLTD--YACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NN
. : :::: :.: . : .: : . : .::. .: : ..
NP_061 KERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGE
270 280 290 300 310 320
200 210 220 230 240 250
pF1KB8 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ
::::: :.: :::::::::::::::::::::::::::.:: :..: ..::.::::::::
NP_061 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ
330 340 350 360 370 380
260 270
pF1KB8 NRRMKMKKINKDRAKDE
:::::.::.:..
NP_061 NRRMKLKKMNRENRIRELTANFNFS
390 400 410
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 394 init1: 319 opt: 350 Z-score: 284.8 bits: 60.8 E(85289): 4e-09
Smith-Waterman score: 368; 40.2% identity (67.5% similar) in 169 aa overlap (103-268:175-328)
80 90 100 110 120 130
pF1KB8 AGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGI
:.: . .. : .:: ::: :. :
NP_067 EPVCAAPGPPHGPAGAASNFYSAVGRNGILPQG--FDQFYEAAPGP-PFAG-PQPPPPPA
150 160 170 180 190 200
140 150 160 170 180 190
pF1KB8 KPEPL-SARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESG-GDKPP
:.: .: .:: : . . . ::: . . . :. .. ::. .: :. ::
NP_067 PPQPEGAADKGD-PR------TGAGGGGGSPCT----KATPGSEPKGAAEGSGGDGEGPP
210 220 230 240
200 210 220 230 240
pF1KB8 IDPN-NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ
. . . ... . . .:::::::::.: :::.::.::.:.....: ...:.::::.::
NP_067 GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ
250 260 270 280 290 300
250 260 270
pF1KB8 VKIWFQNRRMKMKKINKDRAKDE
::::::::::: ::.:.::
NP_067 VKIWFQNRRMKEKKLNRDRLQYFTGNPLF
310 320 330
>>NP_005915 (OMIM: 600535) homeobox protein MOX-2 [Homo (304 aa)
initn: 510 init1: 242 opt: 335 Z-score: 274.0 bits: 58.6 E(85289): 1.6e-08
Smith-Waterman score: 335; 33.2% identity (55.6% similar) in 241 aa overlap (36-264:18-245)
10 20 30 40 50 60
pF1KB8 ALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLA-----EHPDFSPCSFQSKA
: : . ..:: .: .. : .:..
NP_005 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSS
10 20 30 40
70 80 90 100 110 120
pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
.... : ... . .:::::: . : : : . . . :. . :
NP_005 CIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHS
50 60 70 80 90 100
130 140 150 160 170
pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSL-----TDYACGSPPVDREKQPSEGAF
. :.: : :: :. :.: ... :: : ::. : : .: :.
NP_005 LCLQPDS---GGPPELGSSP----PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----AL
110 120 130 140 150
180 190 200 210 220 230
pF1KB8 SENNAENESGGDKPPIDPNNPAANWLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTR
: .::..::: . . .. .:. .. ::.: .::.: ::: :: . ::::
NP_005 SPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTR
160 170 180 190 200 210
240 250 260 270
pF1KB8 DRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
::::.: :.:::::::.:::::::: :..
NP_005 LRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSG
220 230 240 250 260 270
NP_005 IGAATLQQTGDSIANEDSHDSDHSSEHAHL
280 290 300
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 369 init1: 312 opt: 333 Z-score: 272.5 bits: 58.3 E(85289): 1.9e-08
Smith-Waterman score: 335; 34.2% identity (62.6% similar) in 187 aa overlap (84-268:124-294)
60 70 80 90 100 110
pF1KB8 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE
::: :.. : . ... .. ... .
NP_055 AAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDR
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB8 PTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG
.: .: : ..: : :.. :. . . .: ..: . .:.
NP_055 FFDNAYCGGGDPPAEP------PCSGK-GEAK-------GEPEAPPASGLASRAEAGAEA
160 170 180 190
180 190 200 210 220 230
pF1KB8 AFSENNAENESGGDKPPI--DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYL
:.:.. :.:. . .: . :: .: ::::::::.: : :::.::.::.:.
NP_055 EAEEENTNPSSSGSAHSVAKEPAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYI
200 210 220 230 240 250
240 250 260 270
pF1KB8 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
....: ...:.::::.::::::::::::: ::...::
NP_055 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
260 270 280 290 300
272 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:53:41 2016 done: Fri Nov 4 11:53:42 2016
Total Scan time: 6.840 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]