Result of FASTA (ccds) for
pF1KB8327
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8327, 254 aa
1>>>pF1KB8327 254 - 254 aa - 254 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4814+/-0.000743; mu= 12.8371+/- 0.044
mean_var=59.3900+/-11.788, 0's: 0 Z-trim(108.0): 30 B-trim: 0 in 0/49
Lambda= 0.166425
statistics sampled from 9913 (9941) to 9913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.305), width: 16
Scan time: 1.770
The best scores are: opt bits E(32554)
CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 ( 254) 1713 419.4 1.1e-117
CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 ( 361) 278 74.9 8.2e-14
CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 ( 385) 278 75.0 8.7e-14
CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 ( 260) 252 68.7 4.6e-12
CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 ( 308) 252 68.7 5.4e-12
CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 ( 282) 250 68.2 6.9e-12
>>CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 (254 aa)
initn: 1713 init1: 1713 opt: 1713 Z-score: 2226.0 bits: 419.4 E(32554): 1.1e-117
Smith-Waterman score: 1713; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA
190 200 210 220 230 240
250
pF1KB8 VPANMRCGVQTPTA
::::::::::::::
CCDS12 VPANMRCGVQTPTA
250
>>CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 (361 aa)
initn: 297 init1: 73 opt: 278 Z-score: 361.4 bits: 74.9 E(32554): 8.2e-14
Smith-Waterman score: 278; 31.2% identity (55.8% similar) in 224 aa overlap (6-214:73-289)
10 20 30
pF1KB8 MAEAVLRVARRQLSQRGGSGAPILL---RQMFEPV
:: :: . . .. : :. . . ::
CCDS24 LMAHSQRLLFRIGYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPV
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 -SCTFTYLLGDRESREAVLIDPVLETAPRDAQL-IKELGLRLLYAVNTHCHADHITGSGL
: ...::. : ... :: .:: . :: .: :.. :. :. . :: : :: :.
CCDS24 LSDNYSYLIIDTQAQLAVAVDP---SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRD
110 120 130 140 150
100 110 120 130 140
pF1KB8 LRSLLPGCQSVISRLSGAQADLH-IEDGDSIRFGRFALETRASPGHTPGCVTFVLNDH--
: :. : .: : . : . ::. ... :.:::: : ....:. .
CCDS24 LSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPY
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB8 ---SMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYH----GF
: :.:: :.. ::::: :. : :.:. :. . .. : : :..:.:.: ::
CCDS24 KGPSCLFSGDLLFLSGCGRT-FE-GNAETMLSSL-DTVLGLGDDTLLWPGHEYAEENLGF
220 230 240 250 260 270
210 220 230 240 250
pF1KB8 TVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCGVQTPTA
. ..:: : :
CCDS24 A-GVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPG
280 290 300 310 320 330
>>CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 (385 aa)
initn: 297 init1: 73 opt: 278 Z-score: 361.0 bits: 75.0 E(32554): 8.7e-14
Smith-Waterman score: 278; 31.2% identity (55.8% similar) in 224 aa overlap (6-214:97-313)
10 20 30
pF1KB8 MAEAVLRVARRQLSQRGGSGAPILL---RQMFEPV
:: :: . . .. : :. . . ::
CCDS24 RGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB8 -SCTFTYLLGDRESREAVLIDPVLETAPRDAQL-IKELGLRLLYAVNTHCHADHITGSGL
: ...::. : ... :: .:: . :: .: :.. :. :. . :: : :: :.
CCDS24 LSDNYSYLIIDTQAQLAVAVDP---SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRD
130 140 150 160 170 180
100 110 120 130 140
pF1KB8 LRSLLPGCQSVISRLSGAQADLH-IEDGDSIRFGRFALETRASPGHTPGCVTFVLNDH--
: :. : .: : . : . ::. ... :.:::: : ....:. .
CCDS24 LSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPY
190 200 210 220 230 240
150 160 170 180 190 200
pF1KB8 ---SMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYH----GF
: :.:: :.. ::::: :. : :.:. :. . .. : : :..:.:.: ::
CCDS24 KGPSCLFSGDLLFLSGCGRT-FE-GNAETMLSSL-DTVLGLGDDTLLWPGHEYAEENLGF
250 260 270 280 290 300
210 220 230 240 250
pF1KB8 TVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCGVQTPTA
. ..:: : :
CCDS24 A-GVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPG
310 320 330 340 350
>>CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 (260 aa)
initn: 212 init1: 73 opt: 252 Z-score: 330.0 bits: 68.7 E(32554): 4.6e-12
Smith-Waterman score: 252; 27.5% identity (58.0% similar) in 193 aa overlap (27-213:4-188)
10 20 30 40 50 60
pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR
... .. .. ::. : :..::...:::
CCDS32 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVV
10 20 30
70 80 90 100 110
pF1KB8 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLH-IEDGDS
:: .. :..: ...:: : :: :. : .: : . : . . : : : ..
CCDS32 DAA--RKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLK-VYGGDDRIGALTHKITHLST
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 IRFGRFALETRASPGHTPGCVTFVLN-----DHSMAFTGDALLIRGCGRTDFQQGCAKTL
.. : . .. :.: :: : . . .. . .::::.:.. :::. : .: : .
CCDS32 LQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEGTADEM
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 YHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKP
... : . :: : .: .:.: :..... : ..:
CCDS32 CKALLEVLGRLPPDTRVYCGHEY---TINNLKFARHVEPGNAAIREKLAWAKEKYSIGEP
160 170 180 190 200
240 250
pF1KB8 QQIDFAVPANMRCGVQTPTA
CCDS32 TVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRAVRREKDQFKMPRD
210 220 230 240 250 260
>>CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 (308 aa)
initn: 212 init1: 73 opt: 252 Z-score: 328.8 bits: 68.7 E(32554): 5.4e-12
Smith-Waterman score: 252; 27.5% identity (58.0% similar) in 193 aa overlap (27-213:52-236)
10 20 30 40 50
pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLE
... .. .. ::. : :..::...:::
CCDS10 RRGLGPALLGVFCHTDLRKNLTVDEGTMKVEVLPALTDNYMYLVIDDETKEAAIVDPVQP
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB8 TAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLH-IE
:: .. :..: ...:: : :: :. : .: : . : . . : : :
CCDS10 QKVVDAA--RKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLK-VYGGDDRIGALTHKIT
90 100 110 120 130
120 130 140 150 160 170
pF1KB8 DGDSIRFGRFALETRASPGHTPGCVTFVLN-----DHSMAFTGDALLIRGCGRTDFQQGC
.... : . .. :.: :: : . . .. . .::::.:.. :::. : .:
CCDS10 HLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEGT
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB8 AKTLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLN
: . ... : . :: : .: .:.: :..... : ..:
CCDS10 ADEMCKALLEVLGRLPPDTRVYCGHEY---TINNLKFARHVEPGNAAIREKLAWAKEKYS
200 210 220 230 240 250
240 250
pF1KB8 LPKPQQIDFAVPANMRCGVQTPTA
CCDS10 IGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRAVRREKDQFKMPRD
260 270 280 290 300
>>CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 (282 aa)
initn: 224 init1: 110 opt: 250 Z-score: 326.9 bits: 68.2 E(32554): 6.9e-12
Smith-Waterman score: 250; 27.8% identity (55.7% similar) in 194 aa overlap (36-224:13-193)
10 20 30 40 50 60
pF1KB8 LRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPRDAQLI
. ::. .. .:::: .: . . : ...
CCDS32 MKVKVIPVLEDNYMYLVIEELTREAVAVD--VAVPKRLLEIV
10 20 30 40
70 80 90 100 110 120
pF1KB8 KELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRF
. :. : ...:: : :: :. : : :: . . . .. :. .::: .
CCDS32 GREGVSLTAVLTTHHHWDHARGNPELARLRPGLAVLGADERIFSLTRRLAHGEELRFGAI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ALETRASPGHTPGCVTFVL-----NDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE
.. .:::: : ... : : :.:::: . ::: .: :. .:.:. :
CCDS32 HVRCLLTPGHTAGHMSYFLWEDDCPDPPALFSGDALSVAGCGSC--LEGSAQQMYQSLAE
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA
. ::: . .. .:.. :.:..: . ..: :.. :.
CCDS32 -LGTLPPETKVFCGHEH---TLSNLEFAQKVEP-----CNDHVRAKLSWAKKRDEDDVPT
160 170 180 190 200
250
pF1KB8 VPANMRCGVQTPTA
CCDS32 VPSTLGEERLYNPFLRVAEEPVRKFTGKAVPADVLEALCKERARFEQAGEPRQPQARALL
210 220 230 240 250 260
254 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:46:57 2016 done: Fri Nov 4 11:46:57 2016
Total Scan time: 1.770 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]